PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934955.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 357aa    MW: 37850.4 Da    PI: 6.8469
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934955.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016426123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C ++Fs+   L  H+r+H
  XP_010934955.1  4 HRCNLCFRRFSSGRALGGHMRSH 26
                    79********************9 PP
2zf-C2H210.90.0014215237123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+k F++   L  H  +H
  XP_010934955.1 215 YQCGTCKKFFRSYQALGGHRASH 237
                     9***********99999998887 PP
3zf-C2H211.50.00093271293123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C+++F +   L  H r+H
  XP_010934955.1 271 HRCPFCSRVFGSAQALGGHKRSH 293
                     79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.8E-7326IPR007087Zinc finger, C2H2
SuperFamilySSF576672.95E-5332No hitNo description
SMARTSM003550.087426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.489431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576672.52E-7214237No hitNo description
PfamPF139127.0E-9214239IPR007087Zinc finger, C2H2
SMARTSM003550.35215237IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078215237IPR007087Zinc finger, C2H2
PROSITE patternPS000280217237IPR007087Zinc finger, C2H2
SuperFamilySSF576672.52E-7266293No hitNo description
PROSITE profilePS501579.806271298IPR007087Zinc finger, C2H2
SMARTSM003550.0089271293IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-9271295IPR007087Zinc finger, C2H2
PROSITE patternPS000280273293IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MERHRCNLCF RRFSSGRALG GHMRSHVTPR PTRAPPLLPS HSASSSSFSA ADAAADDETA  60
ALAGLGYGLR ENPRKSFRLV DPEFSSSFAA ADGGGGGGSS VVQDRESETE SSLPPPLRRR  120
SKRSRRLPEA AVTADAEPLS SISDVSPEED VARCLMLLSR DAWARLRAGE QADDQQSDGW  180
DETAEDEDYN VDGEDGDEGI GSAARSRRRG RRSRYQCGTC KKFFRSYQAL GGHRASHKKV  240
AGSGSVRAAG GIQIGGEDSS EFNANRNSSL HRCPFCSRVF GSAQALGGHK RSHLASSSSP  300
VATAAAAHSP PLPPPLSANN SSTNLGGEGF IDLNQPAPLE EEGELSALSD ATELQSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029123391.10.0zinc finger protein ZAT1-like
TrEMBLA0A2H3YCX61e-155A0A2H3YCX6_PHODC; zinc finger protein ZAT1-like
STRINGXP_008796938.11e-155(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11214410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.18e-26C2H2-like zinc finger protein