PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010935101.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 234aa    MW: 26620.3 Da    PI: 8.564
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010935101.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538.2e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l+  ++ +G g+W++ ++  g+ R++k+c++rw +yl
   XP_010935101.1 14 KGAWTKEEDERLIAHIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding60.24.3e-1967111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++Edel+++++ +lG++ W++Ia +++ gRt++++k++w+++
   XP_010935101.1  67 RGNFTEDEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNHWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.644961IPR017930Myb domain
SMARTSM007172.0E-131363IPR001005SANT/Myb domain
SuperFamilySSF466891.26E-2913108IPR009057Homeodomain-like
PfamPF002491.1E-141461IPR001005SANT/Myb domain
CDDcd001674.62E-101661No hitNo description
PROSITE profilePS5129429.73462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.8E-2865116IPR009057Homeodomain-like
SMARTSM007171.4E-1766114IPR001005SANT/Myb domain
PfamPF002494.3E-1767111IPR001005SANT/Myb domain
CDDcd001674.48E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLIAHIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEDEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNHWNT HIKRKLLSRG  120
VDPTTHRPIN EHASSNITIS FERREEKGAG FGHEERSSSE ESSTWRQQQL KCPDLNLELC  180
IGPPVQQESL EPVKREGTLC FSCSLGLQKS NECKCNGFLC LSTAVLDYRS LKMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-311311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935101.11e-172myb-related protein Hv1
SwissprotP200261e-117MYB1_HORVU; Myb-related protein Hv1
TrEMBLA0A2H3Z4W11e-145A0A2H3Z4W1_PHODC; myb-related protein Hv1-like
STRINGXP_008808405.11e-146(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-99myb domain protein 4