PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010935246.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 519aa    MW: 57267.1 Da    PI: 5.0689
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010935246.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.45.8e-1071385121374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.....sseelaalklfsevsP 89 
                     lv+lLl+cAeav  +d++la ++L r+ + a+p gd++qR+ ++f+ +L++rl+     ++  +l+   t+  +      +e++  ++l+++++P
  XP_010935246.1 138 LVHLLLACAEAVGCRDTRLAASTLHRIWTFANPCGDSLQRVSFCFAMGLKSRLSLlRNIGITGSLTGAVTN--DgplvtREEKMEGFRLLYQTTP 230
                     68***************************************************984444555555444444..3446667788888999****** PP

            GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                     ++ f++++aN+aI +a+ g++++HiiD+++++ lQWp+L+++L sR+egpp  lRiTg+  ++ ++  el++  + + + A++lg+p+ef++l +
  XP_010935246.1 231 YIAFGFMAANEAICQAARGKDCLHIIDLGMEHTLQWPSLIRTLVSRSEGPPkLLRITGICGATFSDLPELNAGMQAIINEANALGMPVEFRALEE 325
                     ***********************************************9998689*******8888***************************977 PP

            GRAS 184 k.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       + +  ++++L++++gE++ Vn++++lh+ ++e+  + +   ++L + k+l+P +v+vveq+a+hn++ Fl+rfle+l+yysa+fdslea+lpr
  XP_010935246.1 326 ApSPSLPSIDQLQLREGEVVFVNSIMHLHKYVRENRGSLK---AILTATKKLNPALVTVVEQDANHNGPFFLARFLESLHYYSAIFDSLEASLPR 417
                     7466666************************977666555...9*************************************************** PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                     +s +r k+E+  +++ei+n+va eg +r+erhe++ +Wr++l++aGF+ v l++  ++qa++ll+ ++ +gy++ +e+g+l+lgWk+rp++++Sa
  XP_010935246.1 418 ASAQRLKIEKCHFAEEIRNIVAYEGCDRIERHERADQWRRQLGRAGFQVVGLKS--MSQARMLLSVYGCEGYSLASEKGCLLLGWKGRPIMWASA 510
                     ***************************************************976..99************************************* PP

            GRAS 373 Wr 374
                     W+
  XP_010935246.1 511 WQ 512
                     *6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.387112494IPR005202Transcription factor GRAS
PfamPF035142.0E-104138512IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MKGWLSSSSM TPLQDGTLSH GTAIRRFCAA RADQEQDQGE WDDAFFDIET WSSSRDSSSP  60
PCSWASCEET NFIDSVINTS LCDEVNEDAP PVQDLPMYGV SHESLEEVGN SLDYSEVPLV  120
PSGLADIEAR GINEGLELVH LLLACAEAVG CRDTRLAAST LHRIWTFANP CGDSLQRVSF  180
CFAMGLKSRL SLLRNIGITG SLTGAVTNDG PLVTREEKME GFRLLYQTTP YIAFGFMAAN  240
EAICQAARGK DCLHIIDLGM EHTLQWPSLI RTLVSRSEGP PKLLRITGIC GATFSDLPEL  300
NAGMQAIINE ANALGMPVEF RALEEAPSPS LPSIDQLQLR EGEVVFVNSI MHLHKYVREN  360
RGSLKAILTA TKKLNPALVT VVEQDANHNG PFFLARFLES LHYYSAIFDS LEASLPRASA  420
QRLKIEKCHF AEEIRNIVAY EGCDRIERHE RADQWRRQLG RAGFQVVGLK SMSQARMLLS  480
VYGCEGYSLA SEKGCLLLGW KGRPIMWASA WQVNPLSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-5513451115378Protein SCARECROW
5b3h_A8e-5513451114377Protein SCARECROW
5b3h_D8e-5513451114377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935246.30.0DELLA protein RGL1
TrEMBLA0A2H3YAB00.0A0A2H3YAB0_PHODC; DELLA protein GAI1-like
STRINGXP_008795820.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5086422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-76RGA-like 1