PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010935361.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 315aa MW: 35350 Da PI: 7.9515

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010935361.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.8	1e-32	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+e+LGG++kAtPk +l+lm+v gLt++hvkSHLQ+YR+ XP_010935361.1 19 PRLRWTPDLHHCFVHAIERLGGQDKATPKLVLQLMDVRGLTISHVKSHLQMYRS 72 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.633	15	75	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-31	15	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-15	17	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.3E-24	19	72	IPR006447	Myb domain, plants
Pfam	PF00249	2.9E-8	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MGTCGRNGAV RQYIRSKVPR LRWTPDLHHC FVHAIERLGG QDKATPKLVL QLMDVRGLTI 60 SHVKSHLQMY RSMRNDIGKQ GLQQTQEKRH SCEHTDAGAD EQNDGSLFSS LKPQKEFQTQ 120 FMFPPLPMKR SRMEAHAISS SLQCSKGICE TVTSQYSFDD YLQAMAVKRG IKGNLRWQKD 180 DIETGFLAGD QLSKDKAQGH MEEDTGPFKV FKLNDQLLMP NNTIKLKSKE NDEKRCQSCV 240 SPSSFDDHGI KDEEVDDCSL TLSLPMHHNH RTIASSASES RSIISSSLAR NSEDCSVFLN 300 GRGLNLDLSM SICGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-19	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010935361.1	0.0	uncharacterized protein LOC105055282
TrEMBL	A0A2H3YVG6	0.0	A0A2H3YVG6_PHODC; putative Myb family transcription factor At1g14600
STRING	XP_008804408.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	1e-33	G2-like family protein