PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010935456.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LBD
Protein Properties Length: 246aa    MW: 27542.7 Da    PI: 6.3104
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010935456.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.43.2e-40101091100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++rr+C++dC+lapyfp eqpk+f+n+h+lFG+sn++k+l++l++ ++ +am+s++yeA++r r Pv+G++g+i++l+ q+++++ el+
  XP_010935456.1  10 ACAACKYQRRRCSADCPLAPYFPPEQPKQFQNAHRLFGVSNIIKILNKLEPPHKAEAMRSIIYEANVRDRYPVHGCLGLIFTLHLQIQHTQLELD 104
                     7*********************************************************************************************9 PP

          DUF260  96 llkee 100
                     +++++
  XP_010935456.1 105 AINAQ 109
                     98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.4639110IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-3910106IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MTVKGGTSQA CAACKYQRRR CSADCPLAPY FPPEQPKQFQ NAHRLFGVSN IIKILNKLEP  60
PHKAEAMRSI IYEANVRDRY PVHGCLGLIF TLHLQIQHTQ LELDAINAQL SLYRHHHQSS  120
ELHFASLSSS SSSPLTVNTS NYLPFDALPN NTDNKHVEEF WAHNSYNSGS ASNSVIAVTG  180
SGFQTPLGVE HEYDEISPYF DTIEEGRVYE SSSELSLKET VQQEHVSENE LKRAAACFTL  240
TTVDMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-3261137114LOB family transfactor Ramosa2.1
5ly0_B7e-3261137114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935456.10.0LOB domain-containing protein 22-like
TrEMBLA0A2H3Z9V11e-120A0A2H3Z9V1_PHODC; LOB domain-containing protein 22-like
STRINGXP_008810587.11e-121(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52283461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.18e-53LOB domain-containing protein 27