PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010935518.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 220aa MW: 24663 Da PI: 6.717

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010935518.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.3e-06	152	189	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++f+ L++l+ + +K + a++L A+eYIk L XP_010935518.1 152 RKEKLGDRFAALQQLVSPF-----RKTDTASVLVDAIEYIKCL 189 7788999*********7.....6**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.719	140	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.67E-11	150	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.00E-5	150	193	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.9E-8	154	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MGEETHGSGR MSETQQWVSL PANGPIVSTS STSFLEISNP LRARDNEIFQ SSSHMSDGIV 60 EAATVQPIKE EDHRQDLVQP LEHFSSNIPS SLLNNTEGET CPPFPMLNHS GHILLFDNSR 120 IKKPSPDSCS FSSQQKHLEK PITSRITPLK VRKEKLGDRF AALQQLVSPF RKTDTASVLV 180 DAIEYIKCLH EQLTVLCSPY VKMIYEIKKE MGGKEDLRSR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019709640.1	1e-134	transcription factor bHLH112-like isoform X1
TrEMBL	A0A2H3YT35	1e-118	A0A2H3YT35_PHODC; transcription factor bHLH66-like isoform X1
STRING	XP_008803478.1	1e-119	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP50868	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G05170.1	7e-21	bHLH family protein