PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010935624.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Dof

Protein Properties

Length: 262aa MW: 28254.5 Da PI: 5.9403

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010935624.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	112.2	2.3e-35	45	101	3	59
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + l+cprC+s+ntkfCyynnys sqPr+fC+aCrr+Wt+GG+lrnvPvGggr++++ XP_010935624.1 45 AAPLRCPRCESANTKFCYYNNYSKSQPRHFCRACRRHWTEGGTLRNVPVGGGRKNKR 101 56789*********************************************9976554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-23	36	101	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-31	47	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.186	48	102	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MATMDLSSKL VAGDSLDWSQ DGGLEMRKPG SEGKALEQQQ QWQKAAPLRC PRCESANTKF 60 CYYNNYSKSQ PRHFCRACRR HWTEGGTLRN VPVGGGRKNK RVKTAHDASP SMDNNGLAHG 120 QQRKQMAPFD DGDGQGGIFP GILRPVLLHP PPPLPLDYGM DGGGGFAGPV LSSIPPFLPE 180 AATGEADFLS SSANATNPLS SISSSSCSSP YDYTRLDPIV GEDGFAAWQA PTSHLSCWDD 240 ITDLVNAEDS FLSTYPTMKG EV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010935624.1	0.0	dof zinc finger protein 4
TrEMBL	A0A2H3YRA2	1e-142	A0A2H3YRA2_PHODC; dof zinc finger protein 1-like
STRING	XP_008802484.1	1e-142	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	7e-30	Dof family protein