PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010935873.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 383aa    MW: 39554.3 Da    PI: 6.505
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010935873.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.56.8e-17288321134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C   kTp+WR gp g+ktLCnaCG++y++ +
  XP_010935873.1 288 CMHCEIQKTPQWRAGPMGPKTLCNACGVRYKSGR 321
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-15282332IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.897282318IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.85E-14286345No hitNo description
Gene3DG3DSA:3.30.50.102.4E-14286319IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.98E-13287334No hitNo description
PfamPF003201.3E-14288321IPR000679Zinc finger, GATA-type
PROSITE patternPS003440288313IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MATAMKKYVD DAMAEPLDVM CGGLFDHIDD LLDFPNDDDV LGMVDPHGGP APAPSFAPLL  60
PPFEADGLLG GGGGHYSNGS AGVAGSGDRE VGELGPCDNL DITQLEWVSN FFDDNDSFTL  120
DLPQCTAAPT APTLGANNSK EDSLFRTSSP VSVLERNSLS SGGSGGGGSS SSSSLSFSSS  180
SSSCSGTGGG SSGARALEAP PISHPEPALV VPARARSKRP RPAAFSARPH VTIPLSPPSS  240
GSSSDPESLG ESNPVPAPMK KKKKKKSFAA IAAGGDEAGS QPPPVRKCMH CEIQKTPQWR  300
AGPMGPKTLC NACGVRYKSG RLFPEYRPAA SPTFVPSLHS NSHKKVVELR IKSSQSTAAA  360
GMLSPESAAR DSCDLLAYIR MRG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217221KRPRP
2259265KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935873.10.0LOW QUALITY PROTEIN: GATA transcription factor 8-like
TrEMBLA0A2H3YY250.0A0A2H3YY25_PHODC; GATA transcription factor 4-like
STRINGXP_008805201.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-40GATA family protein