PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010935880.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 204aa    MW: 22547.4 Da    PI: 10.1852
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010935880.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-17128178255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr ++ +g+++AeIrd      +r +r++lg+f taeeAa a+++a+ k++g
  XP_010935880.1 128 HYRGVRERP-WGKFAAEIRD----SaRRgARVWLGTFETAEEAALAYDRAAYKMRG 178
                     7*****888.**********....33235*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.6E-31127187IPR001471AP2/ERF domain
PfamPF008472.3E-13128178IPR001471AP2/ERF domain
SMARTSM003809.3E-35128192IPR001471AP2/ERF domain
CDDcd000181.43E-29128186No hitNo description
PROSITE profilePS5103223.657128186IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-22128187IPR016177DNA-binding domain
PRINTSPR003673.7E-11129140IPR001471AP2/ERF domain
PRINTSPR003673.7E-11152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MPPNVLKEKK KKKREDKKET PMEPALDPIR LHLLPENRSQ PSHPCPPNSS TLTDAPAKRR  60
RSDGSDSADG RSVDALSSGR PLKEPVISDG GSSPRLPLDE NDSDDMVLYG ILRETLEPPV  120
VGERKRRHYR GVRERPWGKF AAEIRDSARR GARVWLGTFE TAEEAALAYD RAAYKMRGSR  180
ALLNFPLARG AESSSDGSKP ALPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-33125187264ATERF1
3gcc_A3e-33125187264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1817KKKKKREDKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935880.21e-144ethylene-responsive transcription factor CRF1
TrEMBLA0A2H3YXA38e-89A0A2H3YXA3_PHODC; pathogenesis-related genes transcriptional activator PTI5-like
STRINGXP_008805207.11e-89(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.12e-28ethylene responsive element binding factor 2