PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010935884.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 279aa    MW: 30305 Da    PI: 7.002
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010935884.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.4e-17189225135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C nCgt+k  Tp++Rrgpdg+++LCnaCGl+++ kg+
  XP_010935884.1 189 CLNCGTSKdsTPMMRRGPDGPRSLCNACGLMWANKGT 225
                     99********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009796.6E-74782IPR010399Tify domain
PROSITE profilePS5132013.8484782IPR010399Tify domain
PfamPF062001.1E-104981IPR010399Tify domain
PfamPF062031.5E-16116158IPR010402CCT domain
PROSITE profilePS5101712.253116158IPR010402CCT domain
SuperFamilySSF577161.09E-11182229No hitNo description
SMARTSM004014.7E-11183242IPR000679Zinc finger, GATA-type
CDDcd002021.16E-13188227No hitNo description
Gene3DG3DSA:3.30.50.104.7E-15188227IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501149.17189227IPR000679Zinc finger, GATA-type
PROSITE patternPS003440189216IPR000679Zinc finger, GATA-type
PfamPF003201.8E-15189225IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MYGGEDPFLQ PPHLPGEIDG GGAVRMGGAD EAPQESGSMP EALQLQAPAT SNQLTLSFQG  60
DVYVFDSVQP EMVRAVLLLL GGQEELASDV TGMAVPFHPD HRGLHNVSRS ANNPHRLASL  120
MRYREKRKSL CFNKKILYNV RKEVASRMKR HKGQFASSKV NSEELVTASS SGNFVQNNFQ  180
EETNQHAFCL NCGTSKDSTP MMRRGPDGPR SLCNACGLMW ANKGTLRSQP PVSPAGTYNM  240
SINQMEQSDA NVGSNSHMFS ATSSGHESIV MAESGTPWT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029123609.10.0GATA transcription factor 28
RefseqXP_029123610.10.0GATA transcription factor 28
SwissprotQ8H1G01e-59GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A2H3YXC41e-174A0A2H3YXC4_PHODC; GATA transcription factor 28-like
STRINGXP_008805211.11e-175(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-63ZIM-like 1