PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010935900.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 241aa    MW: 26935.1 Da    PI: 5.3352
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010935900.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.91.9e-0761852348
                     -HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                      W++Ia+ ++ gRt++++k+ w+++l
   XP_010935900.1 61 EWSAIAAQLP-GRTDNEIKNVWHTHL 85
                     4*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.39E-75891IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-126086IPR009057Homeodomain-like
PfamPF002491.3E-56185IPR001005SANT/Myb domain
PROSITE profilePS500906.1686285IPR017877Myb-like domain
CDDcd001671.33E-46285No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MIAFLRFLQK IITSFNNKTA QTSRRFSFVR LRLSLQSSHV PAGRTVRHPE TTLFAWKDFS  60
EWSAIAAQLP GRTDNEIKNV WHTHLKKRVN PNQPVQNPYR KRKAQSDEAM AGMGFGPTAP  120
NGKLQNPSPG PVSPSQSCSD ISSSATNSST ITEEINIAGI KEECTDSSEE LPEIDESFWS  180
EALSIENCDT PMDYNMIAGP PPTSLGHAFF SFSPSNYNND DINFWLKVFM EAGDFQELPD  240
I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
185102KKRVNPNQPVQNPYRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935898.11e-131transcription factor MYB30
TrEMBLA0A3Q0IHD03e-74A0A3Q0IHD0_PHODC; transcription factor MYB30 isoform X2
STRINGXP_008805219.13e-74(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.22e-16myb domain protein 15