PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010936185.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB_related

Protein Properties

Length: 173aa MW: 19992.3 Da PI: 10.0407

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010936185.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.3	7.3e-13	108	152	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E+ l++++ + +G+g+Wk I+r ++t q+ s+ qk+ XP_010936185.1 108 PWTEKEHRLFLKGLAAYGKGDWKNISRNSVVTKTSSQVASHAQKF 152 8******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.9	9	61	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.02E-9	11	65	IPR009057	Homeodomain-like
PROSITE profile	PS50090	4.972	13	59	IPR017877	Myb-like domain
PROSITE profile	PS51294	18.493	101	157	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-14	103	157	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-16	105	155	IPR006447	Myb domain, plants
SMART	SM00717	3.2E-10	105	155	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-9	107	149	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-9	108	151	IPR001005	SANT/Myb domain
CDD	cd00167	1.66E-8	108	153	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MSSNETPSLQ TQWSWYENKT FEVALTEYPE GTPNRWPLIT AKLSGKSLCQ VLDHYRALIH 60 DLELIDSGKV ETPNYRYDDN SDRSNMAPKQ HPTTARSGRG EERRKSVPWT EKEHRLFLKG 120 LAAYGKGDWK NISRNSVVTK TSSQVASHAQ KFFNRRQQNK ESKRKSIHDI TDP

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010936185.1	1e-128	transcription factor DIVARICATA
Swissprot	Q8S9H7	5e-41	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A3Q0I0I6	6e-75	A0A3Q0I0I6_PHODC; transcription factor DIVARICATA-like
STRING	XP_008789580.1	1e-75	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2895	36	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	1e-48	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]