PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936302.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family M-type_MADS
Protein Properties Length: 203aa    MW: 22032.3 Da    PI: 9.7124
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936302.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.51.5e-171761145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    krien+   +vtfskR+  ++ KA EL +LC+ e+a+++fs+ g+
  XP_010936302.1 17 KRIENEDALYVTFSKRKSSLFQKAAELATLCGSEIALVVFSPAGR 61
                    79****************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.764969IPR002100Transcription factor, MADS-box
SMARTSM004326.7E-26968IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-22982IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-161131IPR002100Transcription factor, MADS-box
PfamPF003192.0E-211864IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-163146IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-164667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MATMPKKTMG RQKVKLKRIE NEDALYVTFS KRKSSLFQKA AELATLCGSE IALVVFSPAG  60
RPYSLGLPTV DKVFHRVLSS GPAQMGSGHS VVSHSAKQCS EITKHLEQEK SRKAILVERL  120
QKEAPPRWED GLHGLGWDDL LILAKEVEEL KSKVDSRVCE ILLQGASSST ANADAWPVGS  180
SEGSYGVGPR GPLVSLGMGF NKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936302.11e-148agamous-like MADS-box protein AGL29
TrEMBLA0A2H3XYH59e-96A0A2H3XYH5_PHODC; agamous-like MADS-box protein AGL29
STRINGXP_008790450.12e-96(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.12e-27AGAMOUS-like 28