PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936438.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27980.9 Da    PI: 8.0517
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936438.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF922.8e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRrng+ KKA+ELSvLCdaeva+iifs++g++ e++s
  XP_010936438.1  9 KRIENKINRQVTFSKRRNGLVKKANELSVLCDAEVALIIFSNRGRITEFCS 59
                    79***********************************************96 PP
2K-box99.83.8e-33821739100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     +  ++++++++e+ k+k++ e L ++qR+llGedL++Ls+keL+qLe+q+e slk+iRskK++l+l+q+ +l +ke++lqe+nkaLr++lee
  XP_010936438.1  82 VPPKETQNSYHEYLKMKARFEFLHHSQRNLLGEDLGPLSVKELEQLENQIEISLKHIRSKKTQLMLDQLCDLERKEQMLQEANKALRRRLEE 173
                     556789**********************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.099161IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.2E-32277IPR002100Transcription factor, MADS-box
CDDcd002655.39E-41276No hitNo description
PRINTSPR004046.1E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-303859IPR002100Transcription factor, MADS-box
PfamPF014864.5E-2986171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.89887177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLVK KANELSVLCD AEVALIIFSN RGRITEFCSS  60
SSMLKTIERY QRCSYNATDA IVPPKETQNS YHEYLKMKAR FEFLHHSQRN LLGEDLGPLS  120
VKELEQLENQ IEISLKHIRS KKTQLMLDQL CDLERKEQML QEANKALRRR LEEDTINSLQ  180
LSWQNGANVV GNAPCDGEPP QTEGFFQPLG CEPSLQIGYQ PVCINQMNTE ATTQHVNGYI  240
PGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A5e-29751711101Developmental protein SEPALLATA 3
4ox0_B5e-29751711101Developmental protein SEPALLATA 3
4ox0_C5e-29751711101Developmental protein SEPALLATA 3
4ox0_D5e-29751711101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936438.10.0MADS-box protein EJ2
SwissprotQ8LLR21e-113MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A2H3ZAT31e-153A0A2H3ZAT3_PHODC; MADS-box protein EJ2 isoform X4
STRINGXP_008811033.11e-152(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22213264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-97MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]