PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936466.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 659aa    MW: 75412.1 Da    PI: 6.95
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936466.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.62.8e-2532117290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     fYn+YA  vGFsvrksk+ ++++ +    rt+vCsk+g+r+++k    + +++r+ trtgC a++++k + +g+++vt+++ +HnH la
  XP_010936466.1  32 FYNSYAACVGFSVRKSKMWTTSK-DVLAARTLVCSKQGFRQKKKGF--EPKKPRPATRTGCPACMTIKITPSGRYRVTEFVPDHNHLLA 117
                     9*******************955.559***************9988..999***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-2232117IPR004330FAR1 DNA binding domain
PfamPF105515.8E-26212306IPR018289MULE transposase domain
PfamPF044345.0E-5480525IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.361480527IPR007527Zinc finger, SWIM-type
SMARTSM005757.8E-4502529IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MGVAEHADVP PNPGWIPHLD MQFDNEDAAY AFYNSYAACV GFSVRKSKMW TTSKDVLAAR  60
TLVCSKQGFR QKKKGFEPKK PRPATRTGCP ACMTIKITPS GRYRVTEFVP DHNHLLANPS  120
TARLLRSHRA KVKERIAGDS GMPPDSSDKH QLKRRKAMPV GDAGAVLEYL QRMQVENPSF  180
FYAVRVDGND SIANFFWADA KSVMDYQYFG DVVCFDMTYK ACDCGRPFAL FVGVNNHKQM  240
IIFGSALLYD ESVESLRWLL DTFKDAMRGK QPKTVLTDQC MEITDALVAA WPRTTHRICV  300
WHVYQNAMMH LNQVFEGSKT FAHDFGQCIF DCEEEEEFVY AWRAMIDKYD LDDNEWLAKL  360
YEDRLTWALP YGKQVFCADI KSSLQKENLI SLLKKHLSPQ QELLPFFEHY DTLLNERRCL  420
ELQADAHAGQ NILKVPPLRM LKQAANVYTP AVFKLFQNEF EMYMDCMVYH CGDAGTISDY  480
KVIVDEKSRE HFVRYDSSDS SIFCSCKKFE SAGIQCRHVF KVLDYRNIKE LPPRYILKRW  540
RKDAKLGAVT DHHEYPSADS SKSLIANRDN DLCCIFSTLA ARAAKTVESF TFIESQSELL  600
LEQVEHILQT RTFEIPQLTI ASSIQPRNLI ESVVESLNHD NNTDTNVIIS AANGISFTY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019711300.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_029123923.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_029123925.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_029123926.10.0protein FAR1-RELATED SEQUENCE 5 isoform X3
TrEMBLA0A2H3YYU90.0A0A2H3YYU9_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_008805974.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-112FAR1-related sequence 5