PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010936517.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 863aa MW: 98808.3 Da PI: 7.2515

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010936517.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.9	7.3e-23	75	158	5	90
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++++GFsvr+ k+++ ++++ +++++Cskeg++++e + +++ ++ trtgCka+++ + ++dg+w+vtkl+ eHnH+la XP_010936517.1 75 DYGHRMGFSVRRGKQYYWLGTKNVRSKDYYCSKEGFKNDEYPN--ESSYNKLDTRTGCKAMIRFTVDEDGQWKVTKLVDEHNHDLA 158 7************************************9988..99999********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-20	75	158	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-33	259	353	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.237	542	578	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.1E-6	543	575	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.4E-7	553	580	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 863 aa Download sequence Send to blast
MDSSEYGGRI CWGSHREAIC LDNDGEGEAI YASSDGRGVG KHGESSNDPR CDDVTKELLG 60 TVVHSEEEAY ILCCDYGHRM GFSVRRGKQY YWLGTKNVRS KDYYCSKEGF KNDEYPNESS 120 YNKLDTRTGC KAMIRFTVDE DGQWKVTKLV DEHNHDLAKP EERHLLRSMR STGAKGSVLD 180 PMVNAGIRTI NAYSYMVEEG GGAENLAGDL QSLVSHFKRR ANQEGMFYWD MQLDQEGRAC 240 NFFWRDGRSR VDYDCFGDVV VFNTTYRTNR YNRICVPFIG VNHHWQNVIF GCAFLLDETA 300 SSFIWLFKSF LKSMGDQPPK TIFTDQNQAI TNAITEVFPN TRHRLCLWHI YKNAPSYLGN 360 LNFDQNFHKL FNKCLQGCDS EEEFEETWGK MISKYNVQDH EWLNNLYKIR QKWCTALNKD 420 TFDGGIKSSQ RSESTNNVLH GIADKSTSLI KFVVAFEKLV NGWRKNESEE DFRCNQGAPT 480 RIIKHSEILK HASKMFTHKI YKLFEKEYLD GCGATSSSQE ISLGDTLYKF ELTMQGRGSK 540 VWTVTLDTST MEVSCSCRKF ETMGLLCSHA LKAFNIKNVQ RIPERYILKR WTKDAKKRVY 600 SFDEEGSSKK KCTEAELTYH NQAMRYAYNL VMKSQGYEGA RKILWDTFDL ANAELEKFFA 660 KLSVDAHSTV KDNQANDNDK EAEMVDDDDD DDDEYPMLDP TSVRTEGRST KRLNEHSEKQ 720 KKGSSRREKR KAMENTTKDG SQRLRCLFPA PPSHFPFANP FASSNFYQVQ PTNLGSTSNF 780 YMHSYTLPMP SQSSKVTWGM HGSNIPFTSV VQGVNFANNP NQDMSSHARK HRSETSQPPV 840 GKSAASREET DSEHQRGTSS REA

Sequence ? help Back to Top

Protein Sequence Length: 863 aa Download sequence Send to blast

MDSSEYGGRI CWGSHREAIC LDNDGEGEAI YASSDGRGVG KHGESSNDPR CDDVTKELLG  60
TVVHSEEEAY ILCCDYGHRM GFSVRRGKQY YWLGTKNVRS KDYYCSKEGF KNDEYPNESS  120
YNKLDTRTGC KAMIRFTVDE DGQWKVTKLV DEHNHDLAKP EERHLLRSMR STGAKGSVLD  180
PMVNAGIRTI NAYSYMVEEG GGAENLAGDL QSLVSHFKRR ANQEGMFYWD MQLDQEGRAC  240
NFFWRDGRSR VDYDCFGDVV VFNTTYRTNR YNRICVPFIG VNHHWQNVIF GCAFLLDETA  300
SSFIWLFKSF LKSMGDQPPK TIFTDQNQAI TNAITEVFPN TRHRLCLWHI YKNAPSYLGN  360
LNFDQNFHKL FNKCLQGCDS EEEFEETWGK MISKYNVQDH EWLNNLYKIR QKWCTALNKD  420
TFDGGIKSSQ RSESTNNVLH GIADKSTSLI KFVVAFEKLV NGWRKNESEE DFRCNQGAPT  480
RIIKHSEILK HASKMFTHKI YKLFEKEYLD GCGATSSSQE ISLGDTLYKF ELTMQGRGSK  540
VWTVTLDTST MEVSCSCRKF ETMGLLCSHA LKAFNIKNVQ RIPERYILKR WTKDAKKRVY  600
SFDEEGSSKK KCTEAELTYH NQAMRYAYNL VMKSQGYEGA RKILWDTFDL ANAELEKFFA  660
KLSVDAHSTV KDNQANDNDK EAEMVDDDDD DDDEYPMLDP TSVRTEGRST KRLNEHSEKQ  720
KKGSSRREKR KAMENTTKDG SQRLRCLFPA PPSHFPFANP FASSNFYQVQ PTNLGSTSNF  780
YMHSYTLPMP SQSSKVTWGM HGSNIPFTSV VQGVNFANNP NQDMSSHARK HRSETSQPPV  840
GKSAASREET DSEHQRGTSS REA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019710175.1	0.0	protein FAR1-RELATED SEQUENCE 9
TrEMBL	A0A2H3XQ20	0.0	A0A2H3XQ20_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRING	XP_008787110.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-106	FAR1-related sequence 5