PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936699.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 95aa    MW: 10828.1 Da    PI: 9.577
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936699.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-091357345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+   +l+ +a + + ++   +W+ +ar +g g++++++k ++ 
   XP_010936699.1 13 SWTPKQNKLFERALAVYDKDtpdRWHNVARAVG-GKSAEEVKRHYE 57
                     7********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.913964IPR017884SANT domain
SMARTSM007176.3E-81062IPR001005SANT/Myb domain
SuperFamilySSF466895.77E-131268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-41366IPR009057Homeodomain-like
PfamPF002494.4E-71357IPR001005SANT/Myb domain
CDDcd001671.10E-61460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MASGSLSRSS VSSWTPKQNK LFERALAVYD KDTPDRWHNV ARAVGGKSAE EVKRHYELLV  60
EDLKNIESGQ VPFPNYNIRP SASDEEQRLR NLKLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-36194192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936699.14e-65protein RADIALIS-like 3
SwissprotQ1A1735e-40RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2H3YB935e-54A0A2H3YB93_PHODC; protein RADIALIS-like 3
STRINGXP_008795931.19e-55(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-38RAD-like 6