PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936712.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 480aa    MW: 51438.8 Da    PI: 5.7326
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936712.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.24.9e-109984583374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                      lLl+cAeav+ ++l++a+ lL ++selasp g++ +R+aayf+eAL+ar+++s  + y+ l+ ++ +  + ++  +a ++++ + P++kfsh+t
  XP_010936712.1  98 GLLLQCAEAVAMDHLAEARDLLPEISELASPFGSSAERVAAYFAEALHARIVSSFLGAYSPLALKSLTLAQNQRISQAWQAYNSIAPLVKFSHFT 192
                     58****************************************************************99999999999****************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                     aNqaI ea++ge+rvH+iD+di+qGlQWp L++ LasRp++  s+RiTg+gs    s e le+tg+rL++fA+ lg+pfef++l ak  +  ++ 
  XP_010936712.1 193 ANQAIFEALDGEDRVHVIDLDIMQGLQWPGLFHILASRPAKFRSVRITGLGS----SLELLEATGRRLSDFAAGLGLPFEFRPLEAKIGHVTDPA 283
                     ****************************************************....9**************************988888888999 PP

            GRAS 193 eLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                      ++ +  +E+++V++++  h l+d ++s       +++l+  l+Pk+v++veq+++h +++Fl rf+eal+yysalfd+l  +++++s +r+ vE
  XP_010936712.1 284 VFAPRDrREVTIVHWMH--HCLYDVTGSDLG----TIRLLSALRPKLVTIVEQDLSH-GGDFLGRFVEALHYYSALFDALGDGAGADSADRHAVE 371
                     99877679*****9999..888877888888....9*********************.789*******************9999*********** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     r+ll+ ei+n+va  g +r+ + + +e+W + l+++GF+ ++l  + a+qa+lll +++++gy++ ee g+l lgWkd +L+++SaW+
  XP_010936712.1 372 RQLLAAEIKNIVAVGGPKRTGEVK-VERWGDELRRSGFRRLSLAGSPAAQASLLLGMFPWKGYTLVEEGGCLKLGWKDLSLLTASAWQ 458
                     ******************998887.9*************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.15870438IPR005202Transcription factor GRAS
PfamPF035141.7E-10698458IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MLQSLLPQSP INANSTSNSS VDPMRPKRSD REASSSSATA AAAAESAEGE EDEQRARKRQ  60
HQSGEAEMEE RGEGDGGGGS GGGGGGGGAE SRGLRLLGLL LQCAEAVAMD HLAEARDLLP  120
EISELASPFG SSAERVAAYF AEALHARIVS SFLGAYSPLA LKSLTLAQNQ RISQAWQAYN  180
SIAPLVKFSH FTANQAIFEA LDGEDRVHVI DLDIMQGLQW PGLFHILASR PAKFRSVRIT  240
GLGSSLELLE ATGRRLSDFA AGLGLPFEFR PLEAKIGHVT DPAVFAPRDR REVTIVHWMH  300
HCLYDVTGSD LGTIRLLSAL RPKLVTIVEQ DLSHGGDFLG RFVEALHYYS ALFDALGDGA  360
GADSADRHAV ERQLLAAEIK NIVAVGGPKR TGEVKVERWG DELRRSGFRR LSLAGSPAAQ  420
ASLLLGMFPW KGYTLVEEGG CLKLGWKDLS LLTASAWQLS ESSANDQDDD GGGARHHVVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-15710245724377Protein SCARECROW
5b3h_D1e-15710245724377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936712.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-170SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2H3YJU90.0A0A2H3YJU9_PHODC; LOW QUALITY PROTEIN: scarecrow-like protein 23
STRINGXP_008799890.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-157GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]