PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010936746.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 179aa MW: 20243.2 Da PI: 9.6071

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010936746.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.6	1.2e-09	12	65	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55 + +++E++RR +++ ++L +l+P + ++ l+ + L +A YIksLq XP_010936746.1 12 MERKMVEKNRRMHMKRLCFKLSSLIPReHISSSK-DvLTQQDYLDQAASYIKSLQ 65 56789********************5544444.46***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.385	9	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.72E-10	11	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-11	11	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-6	13	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MKSSNGGSAA KMERKMVEKN RRMHMKRLCF KLSSLIPREH ISSSKDVLTQ QDYLDQAASY 60 IKSLQGRIEN LKHRRELQTS TNGINKDISN EMPIGMRLPV IEVRHQESNL EVVLISGLNR 120 SFTFHEVISI LEEEGAEVVN ANFSVVGDKI FHTIHSQAVS SRIGLEASRV SERLAELVQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010936746.3	1e-128	transcription factor bHLH162
TrEMBL	A0A2H3XEA2	1e-106	A0A2H3XEA2_PHODC; transcription factor bHLH167-like
STRING	XP_008782439.1	1e-107	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	9e-31	bHLH family protein