PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936787.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YB
Protein Properties Length: 154aa    MW: 17266.6 Da    PI: 4.4194
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936787.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB75.67.2e-241193385
           NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
                    ++d  lP a +s+i+k++lP + ++++da++++ ec +efi +v+se+++ c re+++ti+++ +l al  lGf +y+e++ +
  XP_010936787.1 11 KEDVSLPKATMSKIIKEMLPPDVRVARDAQDLLVECCVEFINLVSSESNEVCSREEKRTIAPEHVLKALEVLGFGEYIEEVYA 93
                    68999**************************************************************************9854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-388139IPR009072Histone-fold
SuperFamilySSF471137.42E-3512140IPR009072Histone-fold
PfamPF008082.9E-211579IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEPMDIVGKS KEDVSLPKAT MSKIIKEMLP PDVRVARDAQ DLLVECCVEF INLVSSESNE  60
VCSREEKRTI APEHVLKALE VLGFGEYIEE VYAAYEQHKL DTLDSPKGGK FSGIEMTEEE  120
ALAEQQRMFA EARARMNNGM TLQKQSDPDH GFNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B1e-361213312133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936787.11e-111protein Dr1 homolog isoform X1
SwissprotP495927e-82NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A2H3XS561e-100A0A2H3XS56_PHODC; protein Dr1 homolog
STRINGXP_008787932.11e-101(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57203549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.45e-86nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]