PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936788.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YB
Protein Properties Length: 124aa    MW: 13939.6 Da    PI: 4.3918
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936788.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB39.71.2e-1217633985
           NF-YB 39 vsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
                      efi +v+se+++ c re+++ti+++ +l al  lGf +y+e++ +
  XP_010936788.1 17 PKEFINLVSSESNEVCSREEKRTIAPEHVLKALEVLGFGEYIEEVYA 63
                    47*****************************************9854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.19E-2018111IPR009072Histone-fold
PfamPF008082.9E-71849IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.8E-2118109IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MEPMDIVGKS KEDVSLPKEF INLVSSESNE VCSREEKRTI APEHVLKALE VLGFGEYIEE  60
VYAAYEQHKL DTLDSPKGGK FSGIEMTEEE ALAEQQRMFA EARARMNNGM TLQKQSDPDH  120
GFNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B2e-211410343133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936788.16e-88protein Dr1 homolog isoform X2
SwissprotP495922e-52NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A2H3XS561e-71A0A2H3XS56_PHODC; protein Dr1 homolog
STRINGXP_008787932.12e-72(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.37e-57nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]