PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010936829.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HD-ZIP

Protein Properties

Length: 201aa MW: 22387 Da PI: 6.1535

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010936829.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.6	1.8e-17	70	125	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rrkR +++keq++ Le+ F+ n+++s+ ++eeLA k +++ rqV vWFqNrR + XP_010936829.1 70 RRKRLRLSKEQTKLLEQSFRVNQNISRGDKEELAVKAKVKPRQVEVWFQNRRVSFR 125 89**************************************************8765 PP
2	HD-ZIP_I/II	85.3	8.1e-28	71	161	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +k++rlskeq klLE+sF+ +++++ K+ela + +++prqv+vWFqnrR ++++q+E++ ++Lk+++ l+een rL++e eeLr+ + XP_010936829.1 71 RKRLRLSKEQTKLLEQSFRVNQNISRGDKEELAVKAKVKPRQVEVWFQNRRVSFRMRQIESERAYLKQHCGPLMEENLRLQREIEELRALI 161 5899***********************************************************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.8E-19	56	121	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.99E-18	64	128	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.2	67	127	IPR001356	Homeobox domain
SMART	SM00389	5.7E-14	69	131	IPR001356	Homeobox domain
Pfam	PF00046	1.0E-14	70	125	IPR001356	Homeobox domain
CDD	cd00086	3.04E-15	70	125	No hit	No description
PROSITE pattern	PS00027	0	102	125	IPR017970	Homeobox, conserved site
SMART	SM00340	4.8E-8	127	170	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MEESGKSPSV VEHVIPIPGA SSSAEPEKRG SNIVRDFDIN HPAPEKGEDE DIPEGGAADN 60 AEEGENENPR RKRLRLSKEQ TKLLEQSFRV NQNISRGDKE ELAVKAKVKP RQVEVWFQNR 120 RVSFRMRQIE SERAYLKQHC GPLMEENLRL QREIEELRAL IAASPTSTLT LCSSCESATA 180 LAGTQQCSTS TPSTALGHRL P

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029123757.1	7e-84	homeobox-leucine zipper protein HOX3-like
Swissprot	Q0JKX1	3e-45	HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
Swissprot	Q9XH38	3e-45	HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBL	A0A0E0FQ53	8e-43	A0A0E0FQ53_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0MZW6	8e-43	A0A0E0MZW6_ORYRU; Uncharacterized protein
STRING	ORUFI01G27220.1	1e-43	(Oryza rufipogon)
STRING	OS01T0643600-00	1e-43	(Oryza sativa)
STRING	ONIVA01G27550.1	1e-43	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6826	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	3e-30	homeobox-leucine zipper protein 17