PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010936842.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 424aa MW: 46815.7 Da PI: 8.8154

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010936842.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.9e-06	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_010936842.1 60 YVCEICNQGFQRDQNLQMHRRRH 82 9*********************9 PP
2	zf-C2H2	14.8	8.5e-05	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+k + +s++k H++t+ XP_010936842.1 137 WVCARCSKAYAVQSDYKAHLKTC 159 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.64E-5	57	83	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	59	82	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.97	60	82	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	60	82	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	62	82	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	101	131	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.0E-4	128	158	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	160	137	164	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MLGSPSPAAP ATPGDNNISS SPCLENATNS KRKRRPAGTP DPDAEVISLS PRTLLESDRY 60 VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK REAAEVRKRV FVCPEPSCLH HDPCHALGDL 120 VGIKKHFRRK HSNHKQWVCA RCSKAYAVQS DYKAHLKTCG TRGHSCDCGR VFSRVESFIE 180 HQDACNAGRA RADQQQTPAP ACLSRTTSSP SPSSDTNFSS GAPTWPPVRT PASTTTTTTF 240 QPPPPPDHRH LHNLELQLLP TANAHPTTTT TAATISSTLS PDSDEAHATK LRLSIGPASR 300 SGDKAQEQLR LAMTEKALAD EARLQAKRQV ELAEEEFANA KRIRQQALAE LENAFVVRDH 360 AMKRINSMLL HITCHACRQH FRAKSIVPTD ENSLAAMSFV SSVVTEGDGD DNNNQRHAVK 420 ILDI

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MLGSPSPAAP ATPGDNNISS SPCLENATNS KRKRRPAGTP DPDAEVISLS PRTLLESDRY  60
VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK REAAEVRKRV FVCPEPSCLH HDPCHALGDL  120
VGIKKHFRRK HSNHKQWVCA RCSKAYAVQS DYKAHLKTCG TRGHSCDCGR VFSRVESFIE  180
HQDACNAGRA RADQQQTPAP ACLSRTTSSP SPSSDTNFSS GAPTWPPVRT PASTTTTTTF  240
QPPPPPDHRH LHNLELQLLP TANAHPTTTT TAATISSTLS PDSDEAHATK LRLSIGPASR  300
SGDKAQEQLR LAMTEKALAD EARLQAKRQV ELAEEEFANA KRIRQQALAE LENAFVVRDH  360
AMKRINSMLL HITCHACRQH FRAKSIVPTD ENSLAAMSFV SSVVTEGDGD DNNNQRHAVK  420
ILDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	9e-18	135	187	5	57	Zinc finger protein JACKDAW
5b3h_F	9e-18	135	187	5	57	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:16813575, ECO:0000269\|PubMed:18259878, ECO:0000269\|PubMed:24039602, ECO:0000269\|PubMed:9210330}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010936842.1	0.0	protein indeterminate-domain 16
Swissprot	F4IPE3	1e-146	IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBL	A0A2H3YFX8	0.0	A0A2H3YFX8_PHODC; protein SHOOT GRAVITROPISM 5-like
STRING	XP_008798170.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1051	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-111	C2H2-like zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim JY,Ryu JY,Baek K,Park CM High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis. New Phytol., 2016. 209(1): p. 265-79 [PMID:26256266] Ryu JY,Kim JY,Park CM Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1093715 [PMID:26452406] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128] Shi H, et al. Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17. J. Pineal Res., 2018. 65(2): p. e12494 [PMID:29607541]