PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936882.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bZIP
Protein Properties Length: 419aa    MW: 45222.8 Da    PI: 8.6333
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936882.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_163.15.4e-20329391163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v + ++eN +Lk+el++++ e++kl+se+
  XP_010936882.1 329 ERELKRQKRKQSNRESARRSRLRKQAECEELANRVVTQKEENNSLKEELKRMRGECDKLTSEN 391
                     89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165963.7E-26180291No hitNo description
Gene3DG3DSA:1.20.5.1702.5E-17323388No hitNo description
SMARTSM003387.8E-19329393IPR004827Basic-leucine zipper domain
PfamPF001708.3E-18329391IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.151331394IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.85E-10332388No hitNo description
CDDcd147021.29E-21334385No hitNo description
PROSITE patternPS000360336351IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGSGEVNTPT KTQKPTFTQE QPPSSPAMVY PDWASFQFLL TYRHIIMLLE QVLCLLRGFS  60
ILMWHRVHKG AHICGVHRYL LLLLFAIIFI IYNLVLGGCC NDACLSLQRT GFSSKKKGQV  120
SLIISPYRTP PFVSMYPHGG IYPHPSIPPG SYQYSPYPMP STNGIAEASV AGASGTETDG  180
KVNKTGKASS GSANGVFSQS GESGSEGSSE GSDANSQNGS RLKHGSEHGS GDEEAQKGRT  240
GQTTSNEVTQ TLSTPIVLNP TVPFVTIPPG GLVGPTTTLN IGMDYWGGSA SVSAVRGKVP  300
SAPSTAPFVP SRLAGSRDKV PPDPSIQDER ELKRQKRKQS NRESARRSRL RKQAECEELA  360
NRVVTQKEEN NSLKEELKRM RGECDKLTSE NATLAEKLGK HLGDESRSDE QVDSVNGDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345351RRSRLRK
2345352RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936883.10.0bZIP transcription factor 16 isoform X2
SwissprotQ501B22e-73BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A3Q0I8E21e-168A0A3Q0I8E2_PHODC; bZIP transcription factor 16-like isoform X3
STRINGXP_008798444.11e-156(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.16e-61basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]