PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936886.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 176aa    MW: 19929.9 Da    PI: 6.5148
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936886.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.1e-3096154159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYG+K+vk+s++pr+YYrC+s+gC+vkk+ver++ed ++v++tYeg Hnh+
  XP_010936886.1  96 LDDGYKWRKYGKKTVKNSPNPRNYYRCSSEGCKVKKRVEREREDSSYVITTYEGVHNHH 154
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-3482156IPR003657WRKY domain
SuperFamilySSF1182902.22E-2889156IPR003657WRKY domain
PROSITE profilePS5081132.30591156IPR003657WRKY domain
SMARTSM007743.7E-3596155IPR003657WRKY domain
PfamPF031061.6E-2497154IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSSYSLLSSN SWDNDWPDDM LFEITDYLAL NEELGDVNLA PPPSCQQSPS PLQANGSGDN  60
KTNTSDRDEN KNVVDTTSKG RTARIAFKTK SELDILDDGY KWRKYGKKTV KNSPNPRNYY  120
RCSSEGCKVK KRVEREREDS SYVITTYEGV HNHHAPSPAS SRFQAPDTPQ FHIFSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-2783156174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936886.11e-130probable WRKY transcription factor 45
TrEMBLA0A3Q0HNJ93e-92A0A3Q0HNJ9_PHODC; probable WRKY transcription factor 75 isoform X1
STRINGGSMUA_Achr8P26240_0018e-53(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.18e-39WRKY DNA-binding protein 50