PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936925.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 545aa    MW: 59273.3 Da    PI: 6.4228
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936925.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS196.41.8e-601645392374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.......sseelaalkl....fs 85 
                     ++lL  cA+a+++ + +++q+lL  l elasp+gd+++Rlaay ++ L ++l++  +++++a+++ +            +s+e + ++     f+
  XP_010936925.1 164 EHLLNPCATAIEAANPSRVQHLLYVLDELASPSGDANHRLAAYGLRTLTHHLSS--TRIAAAVNVPTRGGGLaddspcfVSTEPKLFRSalikFH 256
                     699**************************************************9..7787777666554333334566633333333335789** PP

            GRAS  86 evsPilkfshltaNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg....skeeleetgerLakf 168
                     +vsP++ + + +aN  Il+a+  +        ++H++D+++s+G+QWp+Ll+aL+ R++g+p  +R+T+ g++++      +       + L ++
  XP_010936925.1 257 DVSPWFALPNSLANASILQALTLDsnqrprpLHLHVVDIGVSHGVQWPTLLEALTRRQGGAPaLVRLTVAGAAAPPgpfsAAPPGYDFSSHLLRY 351
                     ********************97665555554567************************8888689******988778898889999********* PP

            GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflea 260
                     A++++++++++       ++l +++L++ +gE l+V+ ++++ +        ++ r ++L+ v++l+P++vv++e +  +   +++sF ++f + 
  XP_010936925.1 352 AKSIDLNLRIDQ-----ADSLAPRSLSLASGEILVVCAQFRMGHGG------PDDRMAFLQSVRELNPDLVVLSEVDGGRagdGDGSFPAEFGRR 435
                     *********997.....799********************998887......555789*******************665433778********* PP

            GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                      e  + ++ds++a +    + r   Er++++ e+  v+  +g +     e  e+Wrer+   GF    ++e+a++ a++llrk++++ +++   +
  XP_010936925.1 436 AELLWRFLDSTSAAF----KGRDCAERRVVEGEAARVLEGRGVA-----EGRERWRERMVGLGFWDEGFGEEAVEAARALLRKYDGN-WEMRPAE 520
                     ***********9996....89999999999999******99998.....8999********************************66.7787888 PP

            GRAS 356 gslvlgWkdrpLvsvSaWr 374
                     +++ l Wk++p+ ++S W+
  XP_010936925.1 521 AAVGLWWKGQPVSFCSLWK 539
                     8888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.037137520IPR005202Transcription factor GRAS
PfamPF035146.1E-58164539IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MTLEEGPDSD QTTYHHQHHH LLDWLEDSIS FIPSFLDDPY SNTESIAGYE WWTQDQDQAN  60
LLQTAPSTTP IAVPPATTTT TITQSLPQPE FSKKRKLPTS PITPNKVAAH GNQRRTGPDA  120
SNEGNGKFEE DGDIPQKPAS GRKGQGKGNG GNSGSGNKEV RWAEHLLNPC ATAIEAANPS  180
RVQHLLYVLD ELASPSGDAN HRLAAYGLRT LTHHLSSTRI AAAVNVPTRG GGLADDSPCF  240
VSTEPKLFRS ALIKFHDVSP WFALPNSLAN ASILQALTLD SNQRPRPLHL HVVDIGVSHG  300
VQWPTLLEAL TRRQGGAPAL VRLTVAGAAA PPGPFSAAPP GYDFSSHLLR YAKSIDLNLR  360
IDQADSLAPR SLSLASGEIL VVCAQFRMGH GGPDDRMAFL QSVRELNPDL VVLSEVDGGR  420
AGDGDGSFPA EFGRRAELLW RFLDSTSAAF KGRDCAERRV VEGEAARVLE GRGVAEGRER  480
WRERMVGLGF WDEGFGEEAV EAARALLRKY DGNWEMRPAE AAVGLWWKGQ PVSFCSLWKP  540
HTGRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-3316154085474Protein SHORT-ROOT
5b3h_B2e-3316154031420Protein SHORT-ROOT
5b3h_E2e-3316154031420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019709953.10.0nodulation-signaling pathway 1 protein
SwissprotQ4VYC81e-153NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A2H3YDV80.0A0A2H3YDV8_PHODC; nodulation-signaling pathway 1 protein-like
STRINGXP_008797335.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-102GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]