PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010937133.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

ZF-HD

Protein Properties

Length: 307aa MW: 32009.2 Da PI: 7.9353

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010937133.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	106.2	1.9e-33	42	97	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 + Y+eClkNhAaslGgha+DGCgEfmps+ ++ +++++lkCaACgCHRnFHRr + XP_010937133.1 42 DFLYRECLKNHAASLGGHALDGCGEFMPSPAANpADPTSLKCAACGCHRNFHRRLP 97 578***************************99*****************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	4.6E-28	44	96	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-23	45	95	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.594	45	96	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.0E-30	45	95	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	4.72E-15	182	246	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-26	187	247	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.8E-23	188	244	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MDPSTKILGT DAKPKSFSFP NGSLKRHHRG LSSPAEPAAA ADFLYRECLK NHAASLGGHA 60 LDGCGEFMPS PAANPADPTS LKCAACGCHR NFHRRLPEPL LIHYHSDNGA GGQEGEEDMA 120 GGRDEDREGR DDEEDGSADG HRRGRSSTSP PPYFSSVPHM LLALSSGLPG APSPGRPAAA 180 STVAVLPRKR FRTKFSPEQK ERMHELSERL GWRMQKRDEG LVEERCREIG VGRGVFKVWM 240 HNNKHTFLGS ARRGQEEIRN GGGGGGGGGG GGGGGGDSGG IEGSGNGSAG SGGGGNSHVV 300 NGSSPSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	1e-19	188	246	17	75	ZF-HD homeobox family protein
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010937133.1	0.0	zinc-finger homeodomain protein 9
TrEMBL	A0A2H3XIB5	1e-151	A0A2H3XIB5_PHODC; zinc-finger homeodomain protein 9
STRING	XP_008784223.1	1e-151	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3646	33	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69600.1	7e-43	zinc finger homeodomain 1