PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937295.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 752aa    MW: 85422.4 Da    PI: 7.4633
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937295.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA405.6e-134884135
            GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C  Cg +   Tp++Rrgp+g++tLCnaCG+ + k ++
  XP_010937295.1 48 CLRCGISAkaTPHMRRGPEGPRTLCNACGIAWTKGKM 84
                    5567766666***********************9875 PP
2FAR188.21.2e-27118203188
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                     +fYn+YA +vGFsvrks+s ks++n  + +rtfvCs+eg+r+++k + ++ +r+r+etr+gC a++++k +++g+++vt++  +HnH+
  XP_010937295.1 118 EFYNRYAGHVGFSVRKSSSDKSSENI-TRSRTFVCSREGFRKDKKGA-KEVKRPRPETRIGCPARMTIKITSTGRYRVTEFIPDHNHQ 203
                     6*********************6666.999*************9999.999************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-54294IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-94490No hitNo description
Gene3DG3DSA:3.30.50.109.5E-114685IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.04E-74785No hitNo description
PfamPF003202.1E-105082IPR000679Zinc finger, GATA-type
PfamPF031011.1E-24118203IPR004330FAR1 DNA binding domain
PfamPF105512.7E-31327421IPR018289MULE transposase domain
PROSITE profilePS509669.953595642IPR007527Zinc finger, SWIM-type
PfamPF044347.9E-5595639IPR007527Zinc finger, SWIM-type
SMARTSM005754.3E-4617644IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MHMPEPVDDV RGGGSGSGGD YQMQYEQEPE LEVQPSNGDD GLEGPLRCLR CGISAKATPH  60
MRRGPEGPRT LCNACGIAWT KGKMRKVIDS VAPLDDAAIA KLVPEIDMEF ESEEKAYEFY  120
NRYAGHVGFS VRKSSSDKSS ENITRSRTFV CSREGFRKDK KGAKEVKRPR PETRIGCPAR  180
MTIKITSTGR YRVTEFIPDH NHQPAPPSTT HMLRSQRITT ELQAVEADMS DDSGTTPRST  240
NEPVGRQVGG PRHVNFLPAD YKNHLRSKRM KAMQTGDAGA VLKYLQSMQL DNPSFFYAIQ  300
VDDEDKLTNI LWADSKSILD FNYFGDVVCL DTTYKINGYG RPLTPFLGVN HHKQTVIFGA  360
ALIYDESIES FKWLFDTFKI AMRGKQPKTI LTDQSIAINS AVAAAWPGTS HRLCMWHVYQ  420
NAVKHLNHVF QGSKTFGKDF SRCVYEYEEE EEFLLAWRAM LEKYDLRNNE WLGKLFEERD  480
KWALPYGRQI FCADMKSTLQ NESLSSVLKK YLSPQLDLLS FFKHYERVVD EHRYAELQAD  540
FHASQSFPRI PPSKMLRQAA NIYTPVVFEI FRREFEMFMD CMLYSCGEVD TTSEYRVAVT  600
EKPKEHFVRF DSSDCSAICS CKKFEFMGIQ CCHVLKVLDF RNIKELPQKY YLKRWRKAAK  660
SGNEGDNRAV ANDGDHRSPT SSSLNVPVSS YAQQQGFHGM SQFSQDSPVS DLQPNSFHGS  720
TQLAQGYTAP DMHSQPFLGS SHLNHQGNDP GH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166170KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937295.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
RefseqXP_019710161.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLA0A2H3XF650.0A0A2H3XF65_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X2
STRINGXP_008782870.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-133FAR1-related sequence 5