PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937296.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 668aa    MW: 76616.5 Da    PI: 7.7178
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937296.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR188.41e-2734119188
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                     +fYn+YA +vGFsvrks+s ks++n  + +rtfvCs+eg+r+++k + ++ +r+r+etr+gC a++++k +++g+++vt++  +HnH+
  XP_010937296.1  34 EFYNRYAGHVGFSVRKSSSDKSSENI-TRSRTFVCSREGFRKDKKGA-KEVKRPRPETRIGCPARMTIKITSTGRYRVTEFIPDHNHQ 119
                     6*********************6666.999*************9999.999************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.4E-2534119IPR004330FAR1 DNA binding domain
PfamPF105512.2E-31243337IPR018289MULE transposase domain
PROSITE profilePS509669.953511558IPR007527Zinc finger, SWIM-type
PfamPF044346.8E-5511555IPR007527Zinc finger, SWIM-type
SMARTSM005754.3E-4533560IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MQCMWNCMDK DDAAIAKLVP EIDMEFESEE KAYEFYNRYA GHVGFSVRKS SSDKSSENIT  60
RSRTFVCSRE GFRKDKKGAK EVKRPRPETR IGCPARMTIK ITSTGRYRVT EFIPDHNHQP  120
APPSTTHMLR SQRITTELQA VEADMSDDSG TTPRSTNEPV GRQVGGPRHV NFLPADYKNH  180
LRSKRMKAMQ TGDAGAVLKY LQSMQLDNPS FFYAIQVDDE DKLTNILWAD SKSILDFNYF  240
GDVVCLDTTY KINGYGRPLT PFLGVNHHKQ TVIFGAALIY DESIESFKWL FDTFKIAMRG  300
KQPKTILTDQ SIAINSAVAA AWPGTSHRLC MWHVYQNAVK HLNHVFQGSK TFGKDFSRCV  360
YEYEEEEEFL LAWRAMLEKY DLRNNEWLGK LFEERDKWAL PYGRQIFCAD MKSTLQNESL  420
SSVLKKYLSP QLDLLSFFKH YERVVDEHRY AELQADFHAS QSFPRIPPSK MLRQAANIYT  480
PVVFEIFRRE FEMFMDCMLY SCGEVDTTSE YRVAVTEKPK EHFVRFDSSD CSAICSCKKF  540
EFMGIQCCHV LKVLDFRNIK ELPQKYYLKR WRKAAKSGNE GDNRAVANDG DHRSPTSSSL  600
NVPVSSYAQQ QGFHGMSQFS QDSPVSDLQP NSFHGSTQLA QGYTAPDMHS QPFLGSSHLN  660
HQGNDPGH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18286KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019710162.10.0protein FAR1-RELATED SEQUENCE 5 isoform X4
TrEMBLA0A2H3XF410.0A0A2H3XF41_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A2H3XF650.0A0A2H3XF65_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X2
STRINGXP_008782870.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-134FAR1-related sequence 5