PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937366.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 193aa    MW: 21019.8 Da    PI: 5.0836
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937366.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-191665255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +ykGVr +k +g+WvAe+r p++   r r++lg+++tae+Aa+a++aa  +l+g
  XP_010937366.1 16 QYKGVRMRK-WGKWVAEVRLPNS---RERIWLGSYDTAEKAARAYDAASYCLRG 65
                    6******99.*******999833...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.72E-261675No hitNo description
Gene3DG3DSA:3.30.730.109.4E-301673IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-221674IPR016177DNA-binding domain
PROSITE profilePS5103222.8131673IPR001471AP2/ERF domain
SMARTSM003801.6E-321679IPR001471AP2/ERF domain
PfamPF008475.4E-131765IPR001471AP2/ERF domain
PRINTSPR003676.4E-101728IPR001471AP2/ERF domain
PRINTSPR003676.4E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MENPSSGPRA ASSGNQYKGV RMRKWGKWVA EVRLPNSRER IWLGSYDTAE KAARAYDAAS  60
YCLRGTTAAL NFPADPPNIR SPGRLTRDEI RAAATRHAYE APRVEPQGDA GSSYARQAAA  120
AEDHVVVQTS TSMPRELLSP QIYYLPARCD DVTGTGSHGG GGGGSDDDDN NDDGGNEDTY  180
RPFRLWSFDG EFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1716751474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937366.11e-141ethylene-responsive transcription factor ERF017
SwissprotQ84QC24e-37ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A2H3XPR92e-91A0A2H3XPR9_PHODC; ethylene-responsive transcription factor ERF017
STRINGXP_008786989.13e-92(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-38ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]