PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937565.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 286aa    MW: 31719.8 Da    PI: 9.0174
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937565.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00026385123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + F++   L  H+++H
  XP_010937565.1 63 YSCSFCRREFRSAQALGGHMNVH 85
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.05E-66089No hitNo description
PROSITE profilePS5015711.2196390IPR007087Zinc finger, C2H2
SMARTSM003550.00986385IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MHSAMEQKRY WMWSRRKLGE MALSSQIPLI SVGSSYSKSW EEQAFAEDSA GHLGGCIWPP  60
RSYSCSFCRR EFRSAQALGG HMNVHRRDRA RLKQSSSPAS EPLENSQHHP LTPCMPPIGP  120
QYPPQVGSLV YSSNPKPNPN CGVGESPVSP KVSAASTQEN LSEQTLNISP SYSACIVRGN  180
LKESLFSTNG PPKNSLTVGL FTIPELKLGR ESLRLRELGF RARRDPDEED EAISRKKRRT  240
DPTSPLSVKP SSGDPQQVQS EVLKFSPRPV EELDLELRLG DPPVVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A8e-135885229superman protein
2l1o_A8e-135885229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937565.10.0zinc finger protein 10
TrEMBLA0A2H3YSD31e-159A0A2H3YSD3_PHODC; zinc finger protein 10-like
STRINGXP_008803156.11e-156(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.16e-29C2H2 family protein