PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937700.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 168aa    MW: 18744.6 Da    PI: 8.8823
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937700.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00144163123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ F++   L  H  +H
  XP_010937700.1 41 FECKTCNRQFPSFQALGGHRASH 63
                    89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.22E-839108No hitNo description
PfamPF139122.7E-134065IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8274168IPR007087Zinc finger, C2H2
SMARTSM003550.164163IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
PfamPF139121.3E-986110IPR007087Zinc finger, C2H2
PROSITE profilePS501579.09986113IPR007087Zinc finger, C2H2
SMARTSM003550.586108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKRFREGDQV ESIDMANVLM LLARGGQEMG HLTQDSPGRV FECKTCNRQF PSFQALGGHR  60
ASHKKPRLMG DGHGQAQNAL AKPKLHECSI CGLEFAIGQA LGGHMRRHRP ATEGLRPGLA  120
EKKPDGKRVL WLDLNRPPTE LLDNVECRKV GLSFEFVEKT SMVVDCFH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937700.11e-122zinc finger protein ZAT12-like
TrEMBLA0A2H3Z3091e-108A0A2H3Z309_PHODC; zinc finger protein ZAT12
STRINGXP_008807730.11e-109(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.14e-35C2H2 family protein