PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010937910.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 360aa MW: 40709.4 Da PI: 8.2658

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010937910.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.6	4.9e-32	56	109	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+++AtPk +l+lm+vkgL++ hvkSHLQ+YR+ XP_010937910.1 56 PRLRWTPDLHLCFVHAVERLGGQDRATPKLVLQLMNVKGLSIGHVKSHLQMYRS 109 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.511	52	112	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-30	52	110	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.58E-15	53	110	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-23	55	111	IPR006447	Myb domain, plants
Pfam	PF00249	7.3E-9	57	108	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MMAKNFSEKS ADKEGDEEDG DENPRHGRSS SNSTIEESKK ATGSGSVRQY VRSKNPRLRW 60 TPDLHLCFVH AVERLGGQDR ATPKLVLQLM NVKGLSIGHV KSHLQMYRSK KIDASGRVIA 120 DSRNMIEGRE RFAYSFNHLS MLHDFHQRPH TYSRYDSSLN GHEYWNTMSL GLHSSAAEMI 180 FRGHHGVMGI RESHVDSFTR IDRASGGSRT SEDFHQLYDH KIGRTQFRPR GIEPCSISQM 240 HGGGIQQAGR FSNTCAQEIE QQRTTPAPSL GGRCMMRWRY EDHGLDLDLS LNIASRHEKR 300 KGDWEDEEVD SSLSLALIPP LSKQEGCSRD AERASKLISL KERDYSGEHA RGTSTLDLTI

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MMAKNFSEKS ADKEGDEEDG DENPRHGRSS SNSTIEESKK ATGSGSVRQY VRSKNPRLRW  60
TPDLHLCFVH AVERLGGQDR ATPKLVLQLM NVKGLSIGHV KSHLQMYRSK KIDASGRVIA  120
DSRNMIEGRE RFAYSFNHLS MLHDFHQRPH TYSRYDSSLN GHEYWNTMSL GLHSSAAEMI  180
FRGHHGVMGI RESHVDSFTR IDRASGGSRT SEDFHQLYDH KIGRTQFRPR GIEPCSISQM  240
HGGGIQQAGR FSNTCAQEIE QQRTTPAPSL GGRCMMRWRY EDHGLDLDLS LNIASRHEKR  300
KGDWEDEEVD SSLSLALIPP LSKQEGCSRD AERASKLISL KERDYSGEHA RGTSTLDLTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-16	57	111	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	57	111	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	57	111	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	57	111	3	57	Protein PHOSPHATE STARVATION RESPONSE 1

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010937910.1	0.0	uncharacterized protein LOC105057131 isoform X2
TrEMBL	A0A2H3ZPU4	0.0	A0A2H3ZPU4_PHODC; uncharacterized protein LOC103706719 isoform X2
STRING	XP_008794301.1	1e-154	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4408	36	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	7e-47	G2-like family protein