PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010938017.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Protein Properties

Length: 894aa MW: 98372.9 Da PI: 7.2374

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010938017.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.9	4.5e-19	317	416	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ lt++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_010938017.1 317 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLTVQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRID-PEGK 409 99************************555566778***********99899999999.*******************987.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_010938017.1 410 LVMGFRK 416 7777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.1E-31	309	426	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.8E-21	314	417	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.92E-24	315	416	No hit	No description
SMART	SM01019	4.2E-22	317	417	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.4E-16	317	416	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.364	317	418	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	15.431	578	628	IPR011124	Zinc finger, CW-type
Pfam	PF07496	1.4E-13	583	625	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 894 aa Download sequence Send to blast
MTTKRCMNVA CGATTPEGEW KKGWRLKSGG FANLCNKCGM AYEQLIFCDM FHQNESGWRE 60 CLFCGKCLHC GCIASKLSFD LLDNGGVQCI SCMKNSELSF VSSEVVQKIL PQHNQRLFSL 120 STIKVKDEKV NNVDRTIVGS AGELPTVSAN GRMGVSAIGK GKVAMWLGKN IDSNQQRMVD 180 IEQTKNENGS FQHIKWNRLA PDAAEVGRLA LGTSNAERPL VMLPPPNALT EGGDENKASS 240 AFQQIQRIHQ NLPQLPKLGS GATTDASKDG VSHMRVARPP AEGRGRNQLL PRYWPRITDE 300 ELQQISGDSN STIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPISQPE GLPLTVQDAK 360 GKEWHFQFRF WPNNNSRMYV LEGVTPCIQS LQLQAGDTVT FSRIDPEGKL VMGFRKATNT 420 SPLHDSQISA IANGALGNET FFHGVNENLP TVSGYSGLLW SLTRAADLQL SSQSKSLNSA 480 DVDISYHQTD KHGGRPNEGL QLLLIQKRSR NIGAKFRRMH MDTEDALELT LTWEEAQDLL 540 RPAPNARPSV VMIDDHEIEE YDEPPVLGKK TIYTARLTGE RDQWIQCDDC SKWRRLPADV 600 LLPSVWTCAD NMLDPKRSSC SAPEELSQKD LQSLLQQYAD HKRQQKNATC KRNFAELDAS 660 TGLDALANAA ALGDDCNQTT SSVATTTKHP RHRPGCTCIV CIQPPSGKGP KHSPACTCNV 720 CLTVKRRFKT LMLRKKRRQS EREEAEAQKR NAWGNKEELE GSSSSRNVRH PDAHQESELV 780 HQTVIEKLDT SKRQIDLNCH PGRDEVPQAG PPRQSMMSLL QEANLPLETY LKQSGLASLV 840 GEQGSSSLPT VPQGPGESEG RTADESYFAS VVQEGDGGAE EGHGGPDKAR SDSA

Sequence ? help Back to Top

Protein Sequence Length: 894 aa Download sequence Send to blast

MTTKRCMNVA CGATTPEGEW KKGWRLKSGG FANLCNKCGM AYEQLIFCDM FHQNESGWRE  60
CLFCGKCLHC GCIASKLSFD LLDNGGVQCI SCMKNSELSF VSSEVVQKIL PQHNQRLFSL  120
STIKVKDEKV NNVDRTIVGS AGELPTVSAN GRMGVSAIGK GKVAMWLGKN IDSNQQRMVD  180
IEQTKNENGS FQHIKWNRLA PDAAEVGRLA LGTSNAERPL VMLPPPNALT EGGDENKASS  240
AFQQIQRIHQ NLPQLPKLGS GATTDASKDG VSHMRVARPP AEGRGRNQLL PRYWPRITDE  300
ELQQISGDSN STIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPISQPE GLPLTVQDAK  360
GKEWHFQFRF WPNNNSRMYV LEGVTPCIQS LQLQAGDTVT FSRIDPEGKL VMGFRKATNT  420
SPLHDSQISA IANGALGNET FFHGVNENLP TVSGYSGLLW SLTRAADLQL SSQSKSLNSA  480
DVDISYHQTD KHGGRPNEGL QLLLIQKRSR NIGAKFRRMH MDTEDALELT LTWEEAQDLL  540
RPAPNARPSV VMIDDHEIEE YDEPPVLGKK TIYTARLTGE RDQWIQCDDC SKWRRLPADV  600
LLPSVWTCAD NMLDPKRSSC SAPEELSQKD LQSLLQQYAD HKRQQKNATC KRNFAELDAS  660
TGLDALANAA ALGDDCNQTT SSVATTTKHP RHRPGCTCIV CIQPPSGKGP KHSPACTCNV  720
CLTVKRRFKT LMLRKKRRQS EREEAEAQKR NAWGNKEELE GSSSSRNVRH PDAHQESELV  780
HQTVIEKLDT SKRQIDLNCH PGRDEVPQAG PPRQSMMSLL QEANLPLETY LKQSGLASLV  840
GEQGSSSLPT VPQGPGESEG RTADESYFAS VVQEGDGGAE EGHGGPDKAR SDSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	4e-67	295	424	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	724	735	KRRFKTLMLRKK
2	724	736	KRRFKTLMLRKKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010938017.1	0.0	B3 domain-containing protein Os07g0679700 isoform X1
Refseq	XP_010938018.1	0.0	B3 domain-containing protein Os07g0679700 isoform X1
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A3Q0IF82	0.0	A0A3Q0IF82_PHODC; B3 domain-containing protein Os07g0679700
STRING	XP_008808301.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6519	37	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]