PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010938043.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 251aa    MW: 28142.5 Da    PI: 9.9567
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010938043.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.8e-20110159255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +grW+AeIrdp+    r kr++lg+f+taeeAa+ ++ a+ kl+g
  XP_010938043.1 110 RFRGVRRRP-WGRWAAEIRDPT----RrKRVWLGTFDTAEEAAAVYDSAAVKLKG 159
                     79*******.**********84....34************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381237.8E-5411249IPR017392AP2/ERF transcription factor ERF/PTI6
PROSITE profilePS5103224.526110167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-30110168IPR001471AP2/ERF domain
SMARTSM003805.5E-34110173IPR001471AP2/ERF domain
PfamPF008477.5E-13110159IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-22110168IPR016177DNA-binding domain
PRINTSPR003671.6E-10111122IPR001471AP2/ERF domain
CDDcd000183.00E-23118167No hitNo description
PRINTSPR003671.6E-10133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSRWPSISGR PEKFSEHVTT TRKTVSGSQL AGDLKRHGAE GRRRRKVVRI SFTDGDATDS  60
SSSDEEAGGI ARRRVKRHVH EIGIEVVAAT RRLPLPKRPA RAPEANDRKR FRGVRRRPWG  120
RWAAEIRDPT RRKRVWLGTF DTAEEAAAVY DSAAVKLKGA KAITNFPTEP AVAVTNDDSS  180
CPFPSPTSVR RPSGDQTPFD FLDYGDVDAL GFSVETPLCL TDFYLPRRPC WEAYEFGDFN  240
ADDFSLEVVT F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-201101691474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195115PKRPARAPEANDRKRFRGVRR
2114133RRRPWGRWAAEIRDPTRRKR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010938043.10.0ethylene-responsive transcription factor ERF069
SwissprotO046824e-45PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A2H3ZB481e-139A0A2H3ZB48_PHODC; pathogenesis-related genes transcriptional activator PTI6-like
STRINGXP_008810850.11e-140(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15640615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.19e-10cytokinin response factor 4