PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010938139.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

WOX

Protein Properties

Length: 241aa MW: 26505.7 Da PI: 10.1657

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010938139.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.4	1.6e-15	28	88	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ XP_010938139.1 28 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgAVGDANVFYWFQNRRSRSRR 88 89***************99***********************************997 PP
2	Wus_type_Homeobox	107.9	6.2e-35	27	90	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q XP_010938139.1 27 MRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQ 90 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.37	24	89	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.28E-14	25	95	IPR009057	Homeodomain-like
SMART	SM00389	3.8E-7	26	93	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.0E-9	26	93	IPR009057	Homeodomain-like
Pfam	PF00046	3.1E-13	28	88	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MDDQTPANNN NSPVAGSTAN RTAAEPMRSR WTPKPEQILI LESIFNSGMV NPPKDETVRI 60 RKLLEKFGAV GDANVFYWFQ NRRSRSRRRQ RQLQAALAAD PRAAGGGHHA GGAIMCAPTS 120 SSSSTSSSNS SSGGFFPCSS SSSSSFMQED GADDLFSISR QMGFADNYTQ TPFMYSSDAS 180 QLHYQPGFKA YLVWVQNWMN KTMVVLNNSI NNIRRCSFNR QESKLAGLRA AIPFLLLQAA 240 L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010938138.1	1e-136	WUSCHEL-related homeobox 11
Swissprot	Q8GY25	1e-35	WOX12_ARATH; WUSCHEL-related homeobox 12
TrEMBL	A0A2H3XBN8	6e-70	A0A2H3XBN8_PHODC; WUSCHEL-related homeobox 6-like
STRING	XP_008781307.1	1e-70	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	2e-37	WUSCHEL related homeobox 11

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768]