PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010938141.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Dof

Protein Properties

Length: 518aa MW: 56120.6 Da PI: 4.995

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010938141.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.7	6.8e-40	130	190	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s XP_010938141.1 130 PDKVLPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHSA 190 78999*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	116	187	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-32	131	188	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	134	188	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	136	172	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MSEPRDPAIK LFGKTIPLLE RLPPPATAAA AVEAEDKEEC PNDPAPAPEL PEDGEKDTCK 60 EKTDMENNDP MLDAPEELNQ DDPNSSGLNI GSEDENKAHN QDTEVSTDSK AEHDKTEADS 120 SGQEKVLKKP DKVLPCPRCN SMDTKFCYYN NYNVNQPRHF CKNCQRYWTA GGTMRNVPVG 180 AGRRKNKHSA SHYRHIMMSS DGLASGRIDA SDLIPHQALP CGPSVPMRSV KGNGTVLKFG 240 PEVPLCESMA SVLNLGEQKK NSDLGSIACG ENREEPSCAP SVTASNCVEN GFPENAPHME 300 QNGMQGYCNG LTPMPHLQCY PGAPWAYPWG PGWNNIAAMA AGRCSSELVY GPENGSPSLI 360 PWSPPPMMTA LAFCAPTIPF PFMPPSFWGC MSSWPNGAWN APWIGSNGSI SPSSSTRSNG 420 CLGNSSPTLG KHSRDASLQG EEKMEKSLWV PKTLRIDDPD EAAKSSIWAT LGIKPEEGGI 480 FKPFQSKAES KRQTSDDTQV LHANPAALSR SQSFQENT

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MSEPRDPAIK LFGKTIPLLE RLPPPATAAA AVEAEDKEEC PNDPAPAPEL PEDGEKDTCK  60
EKTDMENNDP MLDAPEELNQ DDPNSSGLNI GSEDENKAHN QDTEVSTDSK AEHDKTEADS  120
SGQEKVLKKP DKVLPCPRCN SMDTKFCYYN NYNVNQPRHF CKNCQRYWTA GGTMRNVPVG  180
AGRRKNKHSA SHYRHIMMSS DGLASGRIDA SDLIPHQALP CGPSVPMRSV KGNGTVLKFG  240
PEVPLCESMA SVLNLGEQKK NSDLGSIACG ENREEPSCAP SVTASNCVEN GFPENAPHME  300
QNGMQGYCNG LTPMPHLQCY PGAPWAYPWG PGWNNIAAMA AGRCSSELVY GPENGSPSLI  360
PWSPPPMMTA LAFCAPTIPF PFMPPSFWGC MSSWPNGAWN APWIGSNGSI SPSSSTRSNG  420
CLGNSSPTLG KHSRDASLQG EEKMEKSLWV PKTLRIDDPD EAAKSSIWAT LGIKPEEGGI  480
FKPFQSKAES KRQTSDDTQV LHANPAALSR SQSFQENT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010938141.1	0.0	cyclic dof factor 3
TrEMBL	A0A2H3Y4L3	0.0	A0A2H3Y4L3_PHODC; cyclic dof factor 3-like
STRING	XP_008793337.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-71	cycling DOF factor 2