PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010938177.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C3H

Protein Properties

Length: 152aa MW: 16640.9 Da PI: 8.2211

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010938177.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.5	2.7e-09	64	85	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f rtGtCkyGd Ck+ H++ XP_010938177.1 64 CHHFVRTGTCKYGDACKYFHPK 85 ********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00451	1.6E-5	3	38	IPR003604	Zinc finger, U1-type
SuperFamily	SSF57667	5.42E-16	4	45	No hit	No description
Pfam	PF06220	5.0E-12	5	37	IPR013085	Zinc finger, U1-C type
PROSITE profile	PS50103	14.314	58	86	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.8E-4	60	85	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-7	62	88	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.5E-7	63	87	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-7	63	85	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MPLGKYYCDY CDKQFQDTPS ARKRHLQGIQ HQRARALWYD SLKAEPHGGG PLLQPDGSLA 60 KGVCHHFVRT GTCKYGDACK YFHPKQDVAS PTPAVSGLNF VETVQSPNFL GNQILSGGMV 120 LDHTGVSWGN IPPSLRPPPE GGYPPLPLVD WG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010938177.1	1e-110	zinc finger CCCH domain-containing protein 3 isoform X1
Swissprot	Q0JP11	1e-55	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A2H3Y4R7	4e-99	A0A2H3Y4R7_PHODC; zinc finger CCCH domain-containing protein 3 isoform X2
STRING	XP_008793300.1	4e-98	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12617	23	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	2e-28	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]