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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_010938288.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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| Family | GRAS | ||||||||
| Protein Properties | Length: 539aa MW: 60652.9 Da PI: 4.7215 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 280.7 | 4.4e-86 | 163 | 534 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl....fsevsPil 91
+lLl++Ae +s+++ +a++lL++ ++++s++g+p+qR+++y+t AL++r+ r+ +l++++p + +++l +++ +++ P+
XP_010938288.1 163 ANLLLAAAEKISNQQYDRASNLLQECHKRSSKTGNPVQRAVFYYTDALQERIDREIGGLSSKVPKDGGMTAPeLIKALLSDHPlhvaLYNKLPFS 257
689********************************************************99997665443222444444433246679******* PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
++ ++t q++l+ +++++++H iD++i++G+QW+ +lqaLa+R+ + +l+i +++ s+e++ +tg+rL +fAe+lg+p++f+++++++
XP_010938288.1 258 QIDQFTSVQTMLDNMATARKIHLIDLSIQHGIQWAVFLQALATRTtCPIDRLKISAIDT----SEEAITATGNRLVSFAETLGLPLSFKAVAVSD 348
*********************************************44556*********....9******************************* PP
GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
l+dl+ e++++++gE++ V +++ + +l ++ le +v++++++++P v++v++ ea++ns+sF +rf+eal ++salfd le l r++e
XP_010938288.1 349 LKDLNEEMFELEEGEVIGVRSSMFMSSLIVRPDILE----HVMRVMRKIKPYVMIVADVEAKLNSPSFINRFTEALFFHSALFDFLEGFLKRDDE 439
****************************95555555....5****************************************************** PP
GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
r+ E ++++ i+n++a+eg er +r + Wr+ + + GF + +++e qa+ll+++++ ++ +++++ ++ ++gWk+ pL+++SaW+
XP_010938288.1 440 SRMLAEGSFISQGIRNIIATEGHERLARYVGISVWRSFFARYGFIETEMNEWSRYQARLLVKQFAnGHFCTLDKNGKAWTMGWKGTPLLFISAWK 534
*****************************************************************444456777777777**************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 44.136 | 136 | 513 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.5E-83 | 163 | 534 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 539 aa Download sequence Send to blast |
MLSSPFSFPC FDCDGTQQGY TPLQGFEEEE CIDDLWSGYN SYHDGPFEKV TPLLSSEQQC 60 FQDLAVMDDM QLDTISAAIQ SLDKPLAQET QIQQQPVVPE IPELLGSEEK ASPVNFSSLE 120 LLNNYRSSYS RLNGEKLNEP IDGVTQPVEG GLTNEERENI GLANLLLAAA EKISNQQYDR 180 ASNLLQECHK RSSKTGNPVQ RAVFYYTDAL QERIDREIGG LSSKVPKDGG MTAPELIKAL 240 LSDHPLHVAL YNKLPFSQID QFTSVQTMLD NMATARKIHL IDLSIQHGIQ WAVFLQALAT 300 RTTCPIDRLK ISAIDTSEEA ITATGNRLVS FAETLGLPLS FKAVAVSDLK DLNEEMFELE 360 EGEVIGVRSS MFMSSLIVRP DILEHVMRVM RKIKPYVMIV ADVEAKLNSP SFINRFTEAL 420 FFHSALFDFL EGFLKRDDES RMLAEGSFIS QGIRNIIATE GHERLARYVG ISVWRSFFAR 480 YGFIETEMNE WSRYQARLLV KQFANGHFCT LDKNGKAWTM GWKGTPLLFI SAWKFQQAG |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5hyz_A | 1e-42 | 181 | 534 | 22 | 375 | GRAS family transcription factor containing protein, expressed |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_029124155.1 | 0.0 | LOW QUALITY PROTEIN: DELLA protein RGL1 | ||||
| TrEMBL | A0A2H3ZGA6 | 0.0 | A0A2H3ZGA6_PHODC; DELLA protein RGL1-like | ||||
| STRING | XP_008813389.1 | 0.0 | (Phoenix dactylifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP1722 | 2 | 3 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G66350.1 | 1e-47 | RGA-like 1 | ||||




