PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010938288.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 539aa    MW: 60652.9 Da    PI: 4.7215
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010938288.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS280.74.4e-861635342374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl....fsevsPil 91 
                      +lLl++Ae +s+++  +a++lL++ ++++s++g+p+qR+++y+t AL++r+ r+  +l++++p     +    +++l +++     +++  P+ 
  XP_010938288.1 163 ANLLLAAAEKISNQQYDRASNLLQECHKRSSKTGNPVQRAVFYYTDALQERIDREIGGLSSKVPKDGGMTAPeLIKALLSDHPlhvaLYNKLPFS 257
                     689********************************************************99997665443222444444433246679******* PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                     ++ ++t  q++l+ +++++++H iD++i++G+QW+ +lqaLa+R+  +  +l+i +++     s+e++ +tg+rL +fAe+lg+p++f+++++++
  XP_010938288.1 258 QIDQFTSVQTMLDNMATARKIHLIDLSIQHGIQWAVFLQALATRTtCPIDRLKISAIDT----SEEAITATGNRLVSFAETLGLPLSFKAVAVSD 348
                     *********************************************44556*********....9******************************* PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     l+dl+ e++++++gE++ V +++ + +l  ++  le    +v++++++++P v++v++ ea++ns+sF +rf+eal ++salfd le  l r++e
  XP_010938288.1 349 LKDLNEEMFELEEGEVIGVRSSMFMSSLIVRPDILE----HVMRVMRKIKPYVMIVADVEAKLNSPSFINRFTEALFFHSALFDFLEGFLKRDDE 439
                     ****************************95555555....5****************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r+  E  ++++ i+n++a+eg er +r    + Wr+ + + GF + +++e    qa+ll+++++ ++  +++++ ++ ++gWk+ pL+++SaW+
  XP_010938288.1 440 SRMLAEGSFISQGIRNIIATEGHERLARYVGISVWRSFFARYGFIETEMNEWSRYQARLLVKQFAnGHFCTLDKNGKAWTMGWKGTPLLFISAWK 534
                     *****************************************************************444456777777777**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.136136513IPR005202Transcription factor GRAS
PfamPF035141.5E-83163534IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MLSSPFSFPC FDCDGTQQGY TPLQGFEEEE CIDDLWSGYN SYHDGPFEKV TPLLSSEQQC  60
FQDLAVMDDM QLDTISAAIQ SLDKPLAQET QIQQQPVVPE IPELLGSEEK ASPVNFSSLE  120
LLNNYRSSYS RLNGEKLNEP IDGVTQPVEG GLTNEERENI GLANLLLAAA EKISNQQYDR  180
ASNLLQECHK RSSKTGNPVQ RAVFYYTDAL QERIDREIGG LSSKVPKDGG MTAPELIKAL  240
LSDHPLHVAL YNKLPFSQID QFTSVQTMLD NMATARKIHL IDLSIQHGIQ WAVFLQALAT  300
RTTCPIDRLK ISAIDTSEEA ITATGNRLVS FAETLGLPLS FKAVAVSDLK DLNEEMFELE  360
EGEVIGVRSS MFMSSLIVRP DILEHVMRVM RKIKPYVMIV ADVEAKLNSP SFINRFTEAL  420
FFHSALFDFL EGFLKRDDES RMLAEGSFIS QGIRNIIATE GHERLARYVG ISVWRSFFAR  480
YGFIETEMNE WSRYQARLLV KQFANGHFCT LDKNGKAWTM GWKGTPLLFI SAWKFQQAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-4218153422375GRAS family transcription factor containing protein, expressed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029124155.10.0LOW QUALITY PROTEIN: DELLA protein RGL1
TrEMBLA0A2H3ZGA60.0A0A2H3ZGA6_PHODC; DELLA protein RGL1-like
STRINGXP_008813389.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP172223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-47RGA-like 1