PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010938328.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARR-B
Protein Properties Length: 745aa    MW: 81677.8 Da    PI: 6.027
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010938328.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.17e-27213266155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ +LH++Fv av+qL   +kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  XP_010938328.1 213 KPRVVWSVDLHQQFVAAVNQL-HVDKAVPKKILELMNVPGLTRENVASHLQKYRL 266
                     79*******************.9*******************************8 PP
2Response_reg75.81.6e-25321401109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l ++l+k  y +v++++ +  al++l+e++  +Dl+l D+ mp+mdG++ll++i  e  +lp+i+++a +  + + + +  G
  XP_010938328.1  32 VLVVDDDPTCLKILDRMLRKCLY-DVTTCSRAAVALAMLRERKgaFDLVLSDVYMPDMDGFKLLEHIGLEM-DLPVIMMSADDGRDVVMKGVTHG 124
                     89*********************.***************999999**********************6654.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +e+l++
  XP_010938328.1 125 ACDYLIKPVRMEALRN 140
                     ************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.55E-3629156IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.7E-4229171No hitNo description
SMARTSM004484.2E-3030142IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.16131146IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.3E-2332140IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.49E-2933145No hitNo description
PROSITE profilePS512949.718210269IPR017930Myb domain
SuperFamilySSF466895.91E-19210270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-29212271IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-23213266IPR006447Myb domain, plants
PfamPF002494.5E-6215265IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MDPNRAAAST ASSGRPRDGV GHPPDFPAGL RVLVVDDDPT CLKILDRMLR KCLYDVTTCS  60
RAAVALAMLR ERKGAFDLVL SDVYMPDMDG FKLLEHIGLE MDLPVIMMSA DDGRDVVMKG  120
VTHGACDYLI KPVRMEALRN IWQHVVRKRR NELKELEHSG SAEENDKQKR ALDDGDNASS  180
ASEVSWKNVK RRKDGKEEEE EIEEREDPST LKKPRVVWSV DLHQQFVAAV NQLHVDKAVP  240
KKILELMNVP GLTRENVASH LQKYRLYLRR LNVPQNQARL DTPYTGASEA TFHSVGSFDG  300
LDIQSLAVAG QFPPQSLMAL NSEPRRITTT GIGLSSVDQI GFNPSAQMAN ASNIRPAMMQ  360
QMSNKQLNFL SGPSSSMESG LLGQSQQPVP SYGNMGLRVS DGASGFFSLP SSQRTSTSFS  420
GGTINANMTN SLVMQMTRQG QQFSLSQQQN RIHINMPQQP QTRGQLPNAI AAEHDSRLST  480
TMGHQILSNE VSRHGSGRCG SNMNVCTSLP EGYMNASSYG AVSQALYADF SNSCMNESTG  540
SSYPLATGAG ATTFTSTGML QDAFPPVGNV EALGNSTSLK GVDFVPDYDL LSEVHQSKSR  600
DWKLQNINIS YQLAQQLGSK QSNIDFGSSL LAHQDPIATI KDESSRNTCI VRKETFSVRT  660
DIEREKGECI AQCNSTILVE NSVRVKAEGM SDLSYQGGLF DGNIIQNELM DVVGKKQQEG  720
IGQVDPEFNF DGYSLDDIQG AVQKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-20212272464ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186192KNVKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010938328.10.0two-component response regulator ARR2 isoform X1
TrEMBLA0A2H3XZD90.0A0A2H3XZD9_PHODC; two-component response regulator ARR1-like isoform X1
STRINGXP_008790852.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2940624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.21e-135response regulator 1