PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010938444.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 493aa    MW: 54106.1 Da    PI: 8.4456
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010938444.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002589111123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++C+k F r  nL+ H r H
  XP_010938444.1  89 FFCEICHKGFQRDQNLQLHRRGH 111
                     67*******************88 PP
2zf-C2H211.20.0011165187123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H + +
  XP_010938444.1 165 WKCDKCSKKYAVQSDWKAHSKIC 187
                     58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-488111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.92E-589111No hitNo description
PROSITE profilePS5015710.40889111IPR007087Zinc finger, C2H2
SMARTSM003550.1589111IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SMARTSM00355160130160IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-4153186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.92E-5160185No hitNo description
SMARTSM00355150165185IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MSNITGDGGS FSSGINTGED EDHQHHQQQQ LHHHLFEGPA AARANSDVST SRLPPPLAVK  60
KKRNLPGNPD PTAEVIALSP ETLMATSRFF CEICHKGFQR DQNLQLHRRG HNLPWKLKQR  120
TSTEIRKRVY VCPEPTCVHH NPSRALGDLT GIKKHYCRKH GEKKWKCDKC SKKYAVQSDW  180
KAHSKICGTR EYKCDCGTIF SRRDSFITHR AFCNALAQEN NKLNQPLMAA MASSLQGQAP  240
NLMIPLDANA TSIGLSKFRH DDMKNPPPQA FSNRPLTMAE NLRTIPSSSL QLSCRGPMGF  300
DGLDDVSMDR LMVGSAHMSA TALLEKAAQM GATASGNNIM HRSFPSVMAG PTWAFDTKPF  360
GPIKAHEPFD QLRLQSEHTQ LLGINGGGTT NQFYDPSINH IGVFATARML MNGDDGFSKN  420
VEHHGGGGSG GGTGEGNVMT VDFLGVGGEG SLNEQKQAME YGSIGHQQRL EGLHPFQQQM  480
VHGPEMGKPL WDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-33161224366Zinc finger protein JACKDAW
5b3h_F3e-33161224366Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010938444.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2H3XX140.0A0A2H3XX14_PHODC; protein indeterminate-domain 2-like
STRINGXP_008789952.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125542534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-101C2H2 family protein