PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010938445.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YB
Protein Properties Length: 174aa    MW: 19395.3 Da    PI: 4.9586
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010938445.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.46.4e-5629124297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal+tlGf+dyvep++ yl+kyre+eg+
  XP_010938445.1  29 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALSTLGFDDYVEPMRRYLQKYREMEGD 123
                     89********************************************************************************************9 PP

           NF-YB  97 k 97 
                     +
  XP_010938445.1 124 R 124
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.7E-5522147IPR009072Histone-fold
SuperFamilySSF471135.09E-4131146IPR009072Histone-fold
PfamPF008087.3E-283498IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.4E-206280No hitNo description
PROSITE patternPS0068506581IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.4E-208199No hitNo description
PRINTSPR006152.4E-20100118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MADGMGSSSD LEGHQNNSYT AQGDQEGIKE QDRLLPIANV GRIMKQILPP NAKISKEAKE  60
TMQECVSEFI SFVTGEASDK CHKEKRKTVN GDDICWALST LGFDDYVEPM RRYLQKYREM  120
EGDRSASGSH GGRVNSSDSR DEERGEQHGD PSSVAGQFMF NAMERSDAST SRRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4428119192Transcription factor HapC (Eurofung)
4g92_B1e-4428119192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010938445.11e-129nuclear transcription factor Y subunit B-1
SwissprotO822482e-58NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2H3XXC41e-107A0A2H3XXC4_PHODC; nuclear transcription factor Y subunit B-1
STRINGXP_008789950.11e-107(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-60nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]