PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010938448.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YB
Protein Properties Length: 171aa    MW: 19513.2 Da    PI: 9.4656
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010938448.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB152.86.5e-4833125395
           NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                      qd++lPianv+rimk++lP nakisk aket+qec+sefisfvt+eas++c++ekrktingdd++ a+ tlG+++y++++k yl +yre  +
  XP_010938448.1  33 GQDHLLPIANVGRIMKQALPDNAKISKRAKETMQECASEFISFVTGEASEQCRKEKRKTINGDDICSAMKTLGLDEYADAMKRYLCRYREHAE 125
                     69***************************************************************************************9754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-4630135IPR009072Histone-fold
SuperFamilySSF471133.25E-3634135IPR009072Histone-fold
PfamPF008083.8E-2738101IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.1E-156583No hitNo description
PROSITE patternPS0068506884IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.1E-1584102No hitNo description
PRINTSPR006154.1E-15103121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MDGSIDGQPY LRGHDCNVAR AKAGTTSYEC INGQDHLLPI ANVGRIMKQA LPDNAKISKR  60
AKETMQECAS EFISFVTGEA SEQCRKEKRK TINGDDICSA MKTLGLDEYA DAMKRYLCRY  120
REHAEKATSM KRNKPVQINV RNELPVFRSH QYRDRSPSKR HCNVAQERKF L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4034122492Transcription factor HapC (Eurofung)
4g92_B2e-4034122492Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010938448.11e-127transcriptional activator hap3-like
SwissprotO822481e-43NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2H3YBN71e-109A0A2H3YBN7_PHODC; nuclear transcription factor Y subunit B-3-like
STRINGXP_008796244.11e-110(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.14e-46nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]