PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010938858.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family SBP
Protein Properties Length: 860aa    MW: 96043.7 Da    PI: 5.6966
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010938858.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP114.75e-36166242177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cqv++C ad+ e+k yhrrh+vC  +++a++v+++g+ +r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k 
  XP_010938858.1 166 TCQVPACGADIRELKGYHRRHRVCLRCANASSVVLDGEPKRYCQQCGKFHLLSDFDEGKRSCRRKLERHNRRRRRKP 242
                     6************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.6E-28162228IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.282164241IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-32165244IPR004333Transcription factor, SBP-box
PfamPF031101.4E-26167241IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 860 aa     Download sequence    Send to blast
METDLNPVTA VPSPAPSLTP SSPRVRVSEM EIPPMADGSA AAAEAEAAVW DWENLLDCTI  60
DEEDPWNLFW GSTEHGQTST PPPLPPLMAG EPSNLPPVPA GTAAADGNNR VRKRDLRLVC  120
PNYLAGRVPC ACPEMDEMEL EEEDVGEVVA GGRKRARTGG VAAAATCQVP ACGADIRELK  180
GYHRRHRVCL RCANASSVVL DGEPKRYCQQ CGKFHLLSDF DEGKRSCRRK LERHNRRRRR  240
KPSDSRNAVE KELETQGDPQ TDVICNGKPG KDMSNIACDT VETVVCDRSL DAETLLGSED  300
GSGSPICSIP SFQNDQNASL ASFAASAEAH ADERRDNSKS ALSSTLCDNK STYSSVCPTG  360
RISFKLYDWN PAEFPRRLRH QIFHWLASMP VELEGYIRPG CTILTVFISM PQFMWEKLSQ  420
DVAQCIRDLV NAPGSLLLGR GTFFIYLSHM IVHVLKDGTS LMNIKMEVQA PRLHYVYPTY  480
FEAGKPMEFV ACGSNLNQPK FRFLVSFAGK YLSFDSCSVI SHGKTKYYDE NGAECLHNSD  540
HEMLRINITE TNLDVFGPAF IEVENVYGIS NFVPILVGNK NVCSEMKRIQ DALGEPYCAD  600
SIMSQNAVSG ASPALCEFFV SRQNAISELL LDIAWLLKEP HIDERESLFS LGDIQRLTSL  660
LKFLIQNRFV SIIEVVLHYW DNIVDGKGFD KSENWYSDAD MRLLHEYVNH AKEILCQRTL  720
HDVESELDSK NSIDGNDVLQ SYLQSDVVYT LPCTNQDRGA RNEDSSCSAT SSATQEDDEN  780
VALVTNRIIH RRRCYPHLGT QWHRQSWGDI FPTNIMRRRL GVILMVSVVT CFAACIVLFH  840
PHRAREFAVF RRCLFGGPTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A2e-39162245184squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223241KRSCRRKLERHNRRRRRKP
2227239RRKLERHNRRRRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010938858.10.0squamosa promoter-binding-like protein 9
SwissprotQ6I5760.0SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLA0A2H3Z6X20.0A0A2H3Z6X2_PHODC; squamosa promoter-binding-like protein 9 isoform X1
STRINGXP_008809291.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.11e-174squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]