PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939027.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 420aa    MW: 46524 Da    PI: 4.4376
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939027.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM608e-191812610128
             NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkk 104
                     tdeelv  +   +  g++++  +vi+ev  ++vePw+ p      e+ wy + + d ++ +g+ + ++t++gyWk  g  +  +s  + +vg k+
  XP_010939027.1  18 TDEELV-LFVGGRKFGDPVPD-NVITEVSPFSVEPWNSP------EDMWYLYNPDDPQSLNGECEIKVTRTGYWKPMGGLRIFTS--TPTVGRKT 102
                     899999.66777777778777.89**************9......468******************************9776665..889***** PP

             NAM 105 tLvfykgrapkgektdWvmheyrl 128
                     t  fy g+ap+g kt W+mhey+ 
  XP_010939027.1 103 TREFYIGKAPNGDKTGWTMHEYQT 126
                     **********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.2299149IPR003441NAC domain
SuperFamilySSF1019419.94E-2717149IPR003441NAC domain
PfamPF023656.8E-917125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MCPSAPFSVP LDINASSTDE ELVLFVGGRK FGDPVPDNVI TEVSPFSVEP WNSPEDMWYL  60
YNPDDPQSLN GECEIKVTRT GYWKPMGGLR IFTSTPTVGR KTTREFYIGK APNGDKTGWT  120
MHEYQTEQKT HQGINKEQDH CSLYRVFFQI NERPNHEEQH NSMIADAADG DYLEHVLLNL  180
LEQENNSSSS GAGNRSQMVG RDQQGQSVLS GTSVTGPETD SSAEDVYATC DFSKGDYLEL  240
NDLYSPGTSS SSSDNSSLMS VNSDEYFDAD ALLRDLENEH NPRVEEEHAD CRYSVSASVK  300
SNQVVIRPPP SDAYVAQPFE LPNILGLVIQ QILFFELKTC HSLIALNAQF AVTVAVIWWQ  360
KGAHLPIQCL KGHGLPALPL LLMSYLITGR LLVQANLQVV IQTNLLPVVH VAAGLPEVRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-16314711163NO APICAL MERISTEM PROTEIN
1ut4_B1e-16314711163NO APICAL MERISTEM PROTEIN
1ut7_A1e-16314711163NO APICAL MERISTEM PROTEIN
1ut7_B1e-16314711163NO APICAL MERISTEM PROTEIN
3swm_A1e-16314714166NAC domain-containing protein 19
3swm_B1e-16314714166NAC domain-containing protein 19
3swm_C1e-16314714166NAC domain-containing protein 19
3swm_D1e-16314714166NAC domain-containing protein 19
3swp_A1e-16314714166NAC domain-containing protein 19
3swp_B1e-16314714166NAC domain-containing protein 19
3swp_C1e-16314714166NAC domain-containing protein 19
3swp_D1e-16314714166NAC domain-containing protein 19
4dul_A1e-16314711163NAC domain-containing protein 19
4dul_B1e-16314711163NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939027.10.0NAC domain-containing protein 35 isoform X1
TrEMBLA0A3Q0IDV70.0A0A3Q0IDV7_PHODC; NAC domain-containing protein 35-like isoform X4
STRINGXP_008806190.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109162632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.17e-23NAC domain containing protein 28