PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010939132.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LBD

Protein Properties

Length: 210aa MW: 22384.6 Da PI: 7.6037

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010939132.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.4	7.3e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C++lr++C++ C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++l+++ XP_010939132.1 2 SCNGCRILRKGCSEACILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPETQRPALFQSLLFEACGRTINPVNGAVGLLWSGNWHLCCA 96 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e++l+ XP_010939132.1 97 AVETVLR 103 *998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.316	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.5E-26	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MSCNGCRILR KGCSEACILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPETQR 60 PALFQSLLFE ACGRTINPVN GAVGLLWSGN WHLCCAAVET VLRGGTLLPL SDLDDAAADH 120 GSASAEGGLY ARPRAAGWSI AAKQRKTAPA NDMQAPPCDL ELCLTPRSLA AAREERRLRP 180 ETPSMTSEGS VTTSGESGGD RLPRLLNLFV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010939132.1	1e-152	LOB domain-containing protein 38
Swissprot	Q9SN23	2e-71	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A2H3YMC1	1e-125	A0A2H3YMC1_PHODC; LOB domain-containing protein 38-like
STRING	XP_008800648.1	1e-126	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	2e-67	LOB domain-containing protein 39