PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939263.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 490aa    MW: 53605.3 Da    PI: 7.6926
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939263.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00018931123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C ksF++  +L  H+r+H
  XP_010939263.1  9 HRCKVCRKSFPSGRSLGGHMRSH 31
                    79********************8 PP
2zf-C2H216.13.3e-058099221
                    EETTTTEEESSHHHHHHHHH CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                    +C  Cgk+Fs++ +L  H+r
  XP_010939263.1 80 QCRECGKVFSSWRSLFGHMR 99
                    7******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.2E-9831IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-9831No hitNo description
PROSITE profilePS5015710.118934IPR007087Zinc finger, C2H2
SMARTSM003550.0055931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801133IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-974101No hitNo description
PROSITE profilePS5015710.49279106IPR007087Zinc finger, C2H2
SMARTSM003550.003779101IPR015880Zinc finger, C2H2-like
PfamPF139124.4E-680103IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-480101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
PfamPF139127.2E-12327351IPR007087Zinc finger, C2H2
SMARTSM003550.056328350IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471328355IPR007087Zinc finger, C2H2
SuperFamilySSF576673.41E-8328350No hitNo description
PROSITE patternPS000280330350IPR007087Zinc finger, C2H2
SuperFamilySSF576673.41E-8392419No hitNo description
PROSITE profilePS5015710.18397419IPR007087Zinc finger, C2H2
PfamPF139123.5E-10397419IPR007087Zinc finger, C2H2
SMARTSM003550.19397419IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280399419IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MEGDRAQRHR CKVCRKSFPS GRSLGGHMRS HVHTAVVGSS ETGAEERPTP GIRGTGYGLR  60
ENPKKTWRLS DYTGDDGEKQ CRECGKVFSS WRSLFGHMRC HPERMRQASE EGSWSNGGQS  120
ESEAAAAAVP RRRRGSRRMA AAIAASSSSG SEYYEKQEED GAISLMMLSR DVWYSVGGSS  180
GGVLSVAESS DKNSVVLEGK GIGEGDGDFV SRNGYWRNGL KRVESVASDD RFVRDREFKK  240
PKVCNSDADE FENSSDEVLR KDSSKKKDLN SALVAELGLK PRLDGSEFED EKQRFDVADA  300
KFGRDHVEGY RFDASDGGFD KFPKRSRFEC TTCNKTFHSY QALGGHRASH KRMKGCCGSE  360
NSLETDASVE QAATQKAVDR CVGIEAANGL SKKAKSHECL LCGKVFASGQ ALGGHKRSHL  420
VANSDDRGDA ASHQPIVIQQ QPLEMPDLLD LNLPAPINGE SNNTNVNAEL KSWWAASNLN  480
HEPLVGVISN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939263.10.0zinc finger protein ZAT1-like
TrEMBLA0A2H3ZHB10.0A0A2H3ZHB1_PHODC; uncharacterized protein LOC103695954
STRINGXP_008775635.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1719549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-43C2H2-like zinc finger protein