PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939407.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 253aa    MW: 27841.8 Da    PI: 9.5152
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939407.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.2e-08154194954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  XP_010939407.1 154 ARLRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 194
                     699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.421145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-13146204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-14149204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-13151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-5155194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.43E-6168199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDSDYLNPSP DTQPDWMNMR IQMEKVAEFL ELPPISTEFD ITTVPSPAFN NSPTIPTSPM  60
LSGPQLTIPF VGTTTTQDQP IAPTFFARPT PNTDTGPWGA GDTSPSPKPC SVAAMREMIF  120
RIAAMQPIHV DPEAVKPPRR RNVKISKDPQ SVAARLRRER ISERIRILQR LVPGGTKMDT  180
ASMLDEAIHY VKFLKSQVQS LQRAAAGRTM GVAAPFSAVG FSSSGNQSGF GMAYQLPDQR  240
FIKSSYMNSN HIC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939407.10.0transcription factor HEC2
TrEMBLA0A2H3YEG51e-127A0A2H3YEG5_PHODC; transcription factor HEC1
STRINGXP_008797316.11e-128(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.11e-41bHLH family protein