PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939424.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 249aa    MW: 27917.6 Da    PI: 6.3663
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939424.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-20118166355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+W+AeIrdp+    r  r +lg+f+taeeAa+a++ a+ +++g
  XP_010939424.1 118 YRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDLAAIEFRG 166
                     9*******.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.49E-23117175IPR016177DNA-binding domain
PROSITE profilePS5103225.422117174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-32117174IPR001471AP2/ERF domain
SMARTSM003801.6E-35117180IPR001471AP2/ERF domain
CDDcd000183.44E-32118174No hitNo description
PRINTSPR003671.5E-11118129IPR001471AP2/ERF domain
PfamPF008475.3E-14118166IPR001471AP2/ERF domain
PRINTSPR003671.5E-11140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MVLKRVLSFH SQVPSKTHRQ KKEGDFEMSP PLPFFSRLTR EQESAIVVSA LVHVISGGTT  60
PPPELPLPDT CRLCSIDGCL GCDFFISAEE EATTTTMQGE AVKVDSSWPR KRKKKNMYRG  120
VRQRPWGKWA AEIRDPRRAV RKWLGTFDTA EEAARAYDLA AIEFRGARAK LNFPLPEQLP  180
ADEARDCPQT TAPSPFDQQH ERGVQQGGAR DQGQEMGELW DGLQDLMALD AGELWTDIGA  240
VLPDRPHYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21114175264ATERF1
3gcc_A3e-21114175264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109113RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939424.10.0ethylene-responsive transcription factor ERF071
SwissprotQ9SZ069e-32EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A2H3YDT91e-139A0A2H3YDT9_PHODC; ethylene-responsive transcription factor ERF109-like
STRINGXP_008797314.11e-140(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.18e-30redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]