PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939475.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 270aa    MW: 29851.5 Da    PI: 5.1799
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939475.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.4e-1893189295
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     +k+l++sd++++gr+vlpk+ ae++   +  + ++++ + d++  ++W++k++y  ++ks++y+l  ++ +Fv+ +gL+ gDf++++ d+ ++ +
  XP_010939475.1  93 QKELSHSDASSLGRIVLPKREAEAYlpVLTARDGIEINMDDLETfQVWTFKYRYwpNNKSRMYILD-NTGDFVHTHGLQIGDFIMIYKDD-HKDR 185
                     799************************77788999******5555*********777777777776.********************443.5555 PP

                     .EEE CS
              B3  92 lvvk 95 
                     lv++
  XP_010939475.1 186 LVIR 189
                     6654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-2589201IPR015300DNA-binding pseudobarrel domain
CDDcd100173.24E-2390192No hitNo description
SuperFamilySSF1019367.32E-2091188IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-1592194IPR003340B3 DNA binding domain
PROSITE profilePS508639.06592194IPR003340B3 DNA binding domain
PfamPF023621.1E-1493190IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MVGTRGAARA ANPSGREAED AHGDASDLRS AVGFQASRRR RTAARHRPED AQPVAAPPPD  60
TAPQPGARAC MLDLNVPALD PDQAVDGLRF LLQKELSHSD ASSLGRIVLP KREAEAYLPV  120
LTARDGIEIN MDDLETFQVW TFKYRYWPNN KSRMYILDNT GDFVHTHGLQ IGDFIMIYKD  180
DHKDRLVIRA KKAVKGQPAA SADDEIFNSI VPDIVVASVR YSDLFYPFLD GMSLAYGMGN  240
AYGDGLNYAF AADFTMGFPE ERMENHSVSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-47881931106B3 domain-containing transcription factor FUS3
6j9b_D1e-47881931106B3 domain-containing transcription factor FUS3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939475.10.0B3 domain-containing protein LFL1
SwissprotA4LBC03e-54LFL1_ORYSJ; B3 domain-containing protein LFL1
TrEMBLA0A2H3Z8J81e-129A0A2H3Z8J8_PHODC; B3 domain-containing protein LFL1-like
STRINGXP_008775431.11e-148(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80912736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.12e-48B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang J, et al.
    OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
    Plant J., 2013. 73(4): p. 566-78
    [PMID:23083333]
  3. Guo X, et al.
    The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.
    Plant J., 2013. 75(3): p. 403-16
    [PMID:23581288]
  4. Matsuno K,Fujimura T
    Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds?
    Mol. Genet. Genomics, 2015. 290(4): p. 1551-62
    [PMID:25732383]